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13_2_20cm_scaffold_286

Search features with annotation key words

Displaying items 1-30 of 33 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_286_1
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1809
DNA (1809bp) protein (603aa)
Probable potassium transport system protein kup n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SVW0_9BRAD rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;
trkD; KUP family potassium transport system low affinity
13_2_20cm_scaffold_286_2
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

1821..3881
DNA (2061bp) protein (687aa)
S9C (acylaminoacyl-peptidase) family peptidase (EC:3.4.21.-)
Peptidase, S9C (Acylaminoacyl-peptidase) family {ECO:0000313|EMBL:ACO31580.1}; EC=3.4.21.- {ECO:0000313|EMBL:ACO31580.1};; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteri
Peptidase, S9C (Acylaminoacyl-peptidase) family n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F649_ACIC5
13_2_20cm_scaffold_286_3
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3909..4646)
DNA (738bp) protein (246aa)
cbbZ; phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase {ECO:0000256|HAMAP-Rule:MF_00495, ECO:0000256|SAAS:SAAS00077902}; Short=PGP {ECO:0000256|HAMAP-Rule:MF_00495};; Short=PGPase {ECO:0000256|HAMAP-Rule:MF_00495};; EC=3.1.3.1
Phosphoglycolate phosphatase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GND3_CUPNN
13_2_20cm_scaffold_286_4
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4643..6673)
DNA (2031bp) protein (677aa)
cbbT; transketolase (EC:2.2.1.1)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rh
Transketolase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IYN2_RHOCS rbh
13_2_20cm_scaffold_286_5
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6690..7562)
DNA (873bp) protein (291aa)
Phosphoribulokinase (EC:2.7.1.19); K00855 phosphoribulokinase [EC:2.7.1.19] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
Phosphoribulokinase (EC:2.7.1.19)
Phosphoribulokinase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WTK3_9BURK rbh
13_2_20cm_scaffold_286_6
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7603..8682)
DNA (1080bp) protein (360aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosph
cbbFC1; Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WTK4_9BURK rbh
13_2_20cm_scaffold_286_7
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8702..9688)
DNA (987bp) protein (329aa)
Rubisco accessory protein CbbX, AAA ATPase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HVA5_RUBGI rbh
cbbX; rubisco accessory protein CbbX, AAA ATPase
Rubisco accessory protein CbbX, AAA ATPase {ECO:0000313|EMBL:BAL96942.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatino
13_2_20cm_scaffold_286_8
Leptothrix ochracea, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9690..10388)
DNA (699bp) protein (233aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=735332 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptot
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Leptothrix ochracea L12 RepID=I4Z5D5_9BURK rbh
13_2_20cm_scaffold_286_9
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10408..10857)
DNA (450bp) protein (150aa)
cbbS; ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit CbbS (EC:4.1.1.39)
Ribulose bisphosphate carboxylase small subunit n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WTK6_9BURK
Ribulose bisphosphate carboxylase small subunit {ECO:0000313|EMBL:EHR69079.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium
13_2_20cm_scaffold_286_10
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10881..12362)
DNA (1482bp) protein (494aa)
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain 1 {ECO:0000255|HAMAP-Rule:MF_01338}; Short=RuBisCO large subunit 1 {ECO:0000255|HAMAP-Rule:MF_01338};; EC=4.1.1.39 {ECO:0000255|HAMAP-Rule:MF_01338};; Tax
Ribulose bisphosphate carboxylase large chain 1 n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=RBL1A_METPP rbh
13_2_20cm_scaffold_286_11
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12460..13431
DNA (972bp) protein (324aa)
Transcriptional regulator n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WTK8_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EHR69081.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
LysR family transcriptional regulator
13_2_20cm_scaffold_286_12
unknown

Not on your lists

comp(13700..14017)
DNA (318bp) protein (106aa)

This feature has no annotations

13_2_20cm_scaffold_286_13
unknown

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comp(15061..16578)
DNA (1518bp) protein (506aa)

This feature has no annotations

13_2_20cm_scaffold_286_14
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16778..18670)
DNA (1893bp) protein (631aa)
id=2907553 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
id=2907553 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
13_2_20cm_scaffold_286_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18902..20302
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J4U5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78056.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum
rsbU; serine phosphatase RsbU regulator sigma subunit
13_2_20cm_scaffold_286_16
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20322..20678
DNA (357bp) protein (119aa)
Anti-sigma factor antagonist n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W1F2_MAGSA
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magn
anti-anti-sigma regulatory factor
13_2_20cm_scaffold_286_17
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20675..21115
DNA (441bp) protein (147aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YZE3_DESAF
putative anti-sigma regulatory factor
Putative anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:EGJ51972.1}; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovi
13_2_20cm_scaffold_286_18
unknown

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21191..21535
DNA (345bp) protein (115aa)

This feature has no annotations

13_2_20cm_scaffold_286_19
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21666..21983
DNA (318bp) protein (106aa)
btrV; anti-anti-sigma regulatory factor Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
anti-sigma-factor antagonist id=24533804 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
anti-sigma-factor antagonist
13_2_20cm_scaffold_286_20
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22050..22589
DNA (540bp) protein (180aa)
putative RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=24533805 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
algT; RNA polymerase sigma-22 factor AlgT
13_2_20cm_scaffold_286_21
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22591..23286
DNA (696bp) protein (232aa)
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
13_2_20cm_scaffold_286_22
Acinetobacter junii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23388..23915
DNA (528bp) protein (176aa)
Protein TolA {ECO:0000313|EMBL:ENV63877.1}; TaxID=1217665 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter junii NIPH 182.
13_2_20cm_scaffold_286_23
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24090..27035
DNA (2946bp) protein (982aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
hypothetical protein id=24533808 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Prevotella ruminicola genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin rbh
hypothetical protein
13_2_20cm_scaffold_286_24
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27064..28080
DNA (1017bp) protein (339aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
Putative uncharacterized protein id=4396968 bin=GWC2_Ignavibacteria_56_12 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
hypothetical protein
13_2_20cm_scaffold_286_25
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28617..29849
DNA (1233bp) protein (411aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; M
UPI0003D06F0D related cluster n=1 Tax=unknown RepID=UPI0003D06F0D
adenylate/guanylate cyclase
13_2_20cm_scaffold_286_26
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29800..31401
DNA (1602bp) protein (534aa)
Sensory box histidine kinase/response regulator n=2 Tax=Crocosphaera watsonii RepID=T2IZI2_CROWT
response regulator receiver sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
hypothetical protein
13_2_20cm_scaffold_286_27
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31398..31811
DNA (414bp) protein (138aa)
chemotaxis protein CheY n=1 Tax=Rhizobium mongolense RepID=UPI0003B792C5
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
response regulator CheY-like domain-containing protein
13_2_20cm_scaffold_286_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

31808..32185
DNA (378bp) protein (126aa)
chemotaxis protein CheY n=1 Tax=Spirulina subsalsa RepID=UPI000315FFAA
response regulator receiver protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
two-component response regulator
13_2_20cm_scaffold_286_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

32182..33756
DNA (1575bp) protein (525aa)
adenylate/guanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
adenylate/guanylate cyclase id=14429036 bin=bin3_NC10 species=Methyloferula stellata genus=Methyloferula taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
adenylate/guanylate cyclase
13_2_20cm_scaffold_286_30
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(33767..35704)
DNA (1938bp) protein (646aa)
hypothetical protein id=8267367 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
hypothetical protein Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
hypothetical protein
Displaying items 1-30 of 33 in total

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