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13_2_20cm_scaffold_309

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_309_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..708
DNA (708bp) protein (236aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8); K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
Bifunctional phosphoglucose/phosphomannose isomerase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CN91_DESK7
13_2_20cm_scaffold_309_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

748..1899
DNA (1152bp) protein (384aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
metK; methionine adenosyltransferase (EC:2.5.1.6) id=14625753 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
13_2_20cm_scaffold_309_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1994..3253
DNA (1260bp) protein (420aa)
adenosylhomocysteinase (EC:3.3.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase id=4810684 bin=GWC2_Methylomirabilis_70_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_309_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3265..5979
DNA (2715bp) protein (905aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UPF0182 protein DAMO_1249 id=3462292 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_309_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5986..7584)
DNA (1599bp) protein (533aa)
Putative permease id=3462289 bin=GWA2_Methylomirabilis_73_35 species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YjgP/YjgQ family permease Tax=GWA2_Rokubacteria_73_35_curated
putative permease
13_2_20cm_scaffold_309_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7581..8282)
DNA (702bp) protein (234aa)
YjgP/YjgQ family permease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative permease id=3462289 bin=GWA2_Methylomirabilis_73_35 species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YjgP/YjgQ family permease
13_2_20cm_scaffold_309_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8329..9345
DNA (1017bp) protein (339aa)
Valine--tRNA ligase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Valine--tRNA ligase id=4208290 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_309_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


9353..11638
DNA (2286bp) protein (762aa)
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=GWA2_Rokubacteria_73_35_curated
Valine--tRNA ligase id=4810688 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
valS; valyl-tRNA synthetase
13_2_20cm_scaffold_309_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11635..11940
DNA (306bp) protein (102aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Valyl-tRNA synthetase (EC:6.1.1.9)
Suspect SCG annotation. See neighboring gene [13_2_20cm_scaffold_309_8].
UPI000252BB4D related cluster id=4208291 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_309_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12177..12686
DNA (510bp) protein (170aa)
birA; bira bifunctional protein (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] Tax=GWA2_Rokubacteria_73_35_
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15)
Biotin operon repressor and biotin--acetyl-CoA carboxylase ligase id=4208292 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_309_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12799..13959
DNA (1161bp) protein (387aa)
guaB; IMP dehydrogenase/GMP reductase; K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
IMP dehydrogenase family protein id=4208294 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
guaB; IMP dehydrogenase/GMP reductase
13_2_20cm_scaffold_309_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13974..15527
DNA (1554bp) protein (518aa)
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] id=14625745 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
guaA; GMP synthase (EC:6.3.5.2)
13_2_20cm_scaffold_309_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15545..19015
DNA (3471bp) protein (1157aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit id=4891633 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_2_20cm_scaffold_309_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19008..19970
DNA (963bp) protein (321aa)
acetyl-CoA carboxylase, carboxyl transferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curate
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] id=14627942 bin=bin7_NC10_sister species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=bin7_NC10_sister organism_group=NC10
acetyl-CoA carboxylase subunit alpha
13_2_20cm_scaffold_309_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19960..20910)
DNA (951bp) protein (317aa)
Putative sugar-binding domain protein n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MJ37_9FIRM
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MarR family transcriptional regulator
13_2_20cm_scaffold_309_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21049..22557
DNA (1509bp) protein (503aa)
hypothetical protein; K01622 fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
fbp; bifunctional fructose-1,6-bisphosphatase (EC:3.1.3.11) id=14628042 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_309_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22743..24083
DNA (1341bp) protein (447aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=4527233 bin=GWF2_Methylomirabilis_70_14 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MiaB family RNA modification protein
13_2_20cm_scaffold_309_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24068..24577
DNA (510bp) protein (170aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=4745854 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_2_20cm_scaffold_309_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24595..25755
DNA (1161bp) protein (387aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=4745855 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_2_20cm_scaffold_309_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

25752..26018
DNA (267bp) protein (89aa)
id=14628038 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14628038 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_309_21
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26015..26320
DNA (306bp) protein (102aa)
Uncharacterized protein {ECO:0000313|EMBL:KFE64394.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyal
13_2_20cm_scaffold_309_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

26332..27627
DNA (1296bp) protein (432aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=CSP1_6_Rokubacteria
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] id=14628064 bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phenylacetate--CoA ligase (EC:6.2.1.30)
13_2_20cm_scaffold_309_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

27641..28462
DNA (822bp) protein (274aa)
putative phenylacetic acid degradation protein; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative phenylacetic acid degradation protein id=4527241 bin=GWF2_Methylomirabilis_70_14 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative phenylacetic acid degradation protein
13_2_20cm_scaffold_309_24
unknown

Not on your lists

comp(28535..28786)
DNA (252bp) protein (84aa)

This feature has no annotations

13_2_20cm_scaffold_309_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(29019..29654)
DNA (636bp) protein (212aa)
hypothetical protein id=4745859 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_309_26
unknown

Not on your lists

30052..30249
DNA (198bp) protein (66aa)

This feature has no annotations

13_2_20cm_scaffold_309_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(30291..30506)
DNA (216bp) protein (72aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4745861 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_309_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(30445..30807)
DNA (363bp) protein (121aa)
dioxygenase, ferredoxin subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rieske (2Fe-2S) iron-sulfur domain-containing protein id=4819262 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dioxygenase, ferredoxin subunit
13_2_20cm_scaffold_309_29
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

30889..32196
DNA (1308bp) protein (436aa)
Beta-lactamase domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C608_SPHTD
beta-lactamase domain-containing protein
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="S
13_2_20cm_scaffold_309_30
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32221..33117
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U144_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EDP61972.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
gentisate 1,2-dioxygenase
Displaying items 1-30 of 39 in total

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