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13_2_20cm_scaffold_372

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Displaying items 1-30 of 37 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_372_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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2..520
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH15_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42552.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_2_20cm_scaffold_372_2
unknown

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699..1220
DNA (522bp) protein (174aa)

This feature has no annotations

13_2_20cm_scaffold_372_3
RLO_PLX_64_10, Bacteria

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comp(1278..1739)
DNA (462bp) protein (154aa)
ketosteroid isomerase-like protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
ketosteroid isomerase-like protein id=24506738 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
ketosteroid isomerase-like protein
13_2_20cm_scaffold_372_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(1742..2341)
DNA (600bp) protein (200aa)
flavin reductase-like domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein id=14424636 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
flavin reductase domain-containing protein
13_2_20cm_scaffold_372_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2354..2902
DNA (549bp) protein (183aa)
cell cycle protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tRNA(Ile)-lysidine synthetase
putative cell-cycle protein id=3887388 bin=GWC2_TM7_48_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
13_2_20cm_scaffold_372_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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2934..3659
DNA (726bp) protein (242aa)
cell cycle protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=GWC2_Gemmatimonadetes_71_10_curated
tRNA(Ile)-lysidine synthase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=TILS_SYMTH
cell cycle protein
13_2_20cm_scaffold_372_7
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3616..4170
DNA (555bp) protein (185aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:BAH38434.1}; EC=2.4.2.8 {ECO:0000313|EMBL:BAH38434.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae;
Hypoxanthine phosphoribosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A874_GEMAT
13_2_20cm_scaffold_372_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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4171..6084
DNA (1914bp) protein (638aa)
ftsH; ATP-dependent protease FtsH (EC:3.4.24.-); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A875_GEMAT
peptidase M41 FtsH domain protein
13_2_20cm_scaffold_372_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6081..6497
DNA (417bp) protein (139aa)
RND family efflux transporter, MFP subunit id=24463452 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Xanthomonas axonopodis genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RND family efflux transporter MFP subunit Tax=RBG_16_RIF_WS3X_71_46_curated
RND family efflux transporter MFP subunit
13_2_20cm_scaffold_372_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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6457..7314
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T8U6_9GAMM
RND family efflux pump membrane fusion protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
efflux transporter, RND family, MFP subunit
13_2_20cm_scaffold_372_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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7357..8037
DNA (681bp) protein (227aa)
ABC transporter related protein
ABC transporter related protein {ECO:0000313|EMBL:AHG93527.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ABC transporter related, ATP binding protein id=4913300 bin=GWA2_Ignavibacteria_55_11 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
13_2_20cm_scaffold_372_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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8015..9136
DNA (1122bp) protein (374aa)
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
MacB-like periplasmic core domain protein
hypothetical protein; K02004 putative ABC transport system permease protein id=24463454 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfovibrio sp. FW1012B genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin rbh
13_2_20cm_scaffold_372_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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9133..10296
DNA (1164bp) protein (388aa)
ABC transporter permease Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
MacB-like periplasmic core domain protein
Putative uncharacterized protein id=2222077 bin=GWB2_Geobacter-like_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
13_2_20cm_scaffold_372_14
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10304..11380
DNA (1077bp) protein (359aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|Rule
dihydropteroate synthase (EC:2.5.1.15)
dihydropteroate synthase n=1 Tax=Myxococcus xanthus RepID=UPI000325246C
13_2_20cm_scaffold_372_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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11424..12224
DNA (801bp) protein (267aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A876_GEMAT
hypothetical membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Conserved hypothetical protein CHP00159
13_2_20cm_scaffold_372_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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12286..14514
DNA (2229bp) protein (743aa)
Putative uncharacterized protein n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3AU50_CHLCH
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_2_20cm_scaffold_372_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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14526..15206
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7TD72_9DELT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_2_20cm_scaffold_372_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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15203..15679
DNA (477bp) protein (159aa)
Septum site-determining protein DivIVA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A879_GEMAT
divIVA; septum site-determining protein DivIVA; K04074 cell division initiation protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
protein of unknown function UPF0001
13_2_20cm_scaffold_372_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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15676..16494
DNA (819bp) protein (273aa)
punA; purine nucleoside phosphorylase (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
punA; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A880_GEMAT
13_2_20cm_scaffold_372_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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16494..19616
DNA (3123bp) protein (1041aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A881_GEMAT
13_2_20cm_scaffold_372_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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19616..20035
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A882_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_2_20cm_scaffold_372_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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20019..20534
DNA (516bp) protein (172aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Lipoprotein signal peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A883_GEMAT
Lipoprotein signal peptidase
13_2_20cm_scaffold_372_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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20531..21538
DNA (1008bp) protein (336aa)
rluD; ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A885_GEMAT
pseudouridine synthase, RluA family
13_2_20cm_scaffold_372_24
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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21531..22043
DNA (513bp) protein (171aa)
Chemotaxis signal transduction protein n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4F5H8_MODMB
chemotaxis protein CheW; K03408 purine-binding chemotaxis protein CheW Tax=GWC2_Gemmatimonadetes_71_10_curated
cheW; chemotaxis signal transduction protein
13_2_20cm_scaffold_372_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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22054..22416
DNA (363bp) protein (121aa)
Chemotaxis protein CheY homolog n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A887_GEMAT
chemotaxis protein CheY homolog; K03413 two-component system, chemotaxis family, response regulator CheY Tax=GWC2_Gemmatimonadetes_71_10_curated
chemotaxis protein CheY homolog
13_2_20cm_scaffold_372_26
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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22426..24312
DNA (1887bp) protein (629aa)
cheA; chemotaxis protein CheA (EC:2.7.13.3); K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
cheA; chemotaxis protein CheA (EC:2.7.13.3)
Chemotaxis protein CheA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A888_GEMAT
13_2_20cm_scaffold_372_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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24328..24945
DNA (618bp) protein (206aa)
Chemotaxis protein CheC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A889_GEMAT
cheC; chemotaxis protein CheC; K03410 chemotaxis protein CheC Tax=GWC2_Gemmatimonadetes_71_10_curated
cheC; chemotaxis protein CheC
13_2_20cm_scaffold_372_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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24949..27663
DNA (2715bp) protein (905aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A890_GEMAT rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_scaffold_372_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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27663..28811
DNA (1149bp) protein (383aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein id=7201343 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
13_2_20cm_scaffold_372_30
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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28804..29631
DNA (828bp) protein (276aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetratricopeptide domain protein id=4614255 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying items 1-30 of 37 in total

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