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13_2_20cm_scaffold_984

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Displaying items 1-30 of 43 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_984_1
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..560)
DNA (558bp) protein (186aa)
Uncharacterized protein Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
13_2_20cm_scaffold_984_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

637..1257
DNA (621bp) protein (207aa)
Mg/Co/Ni transporter; K06213 magnesium transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
magnesium transporter; K06213 magnesium transporter id=14626380 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
mgtE; magnesium transporter
13_2_20cm_scaffold_984_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1372..2001
DNA (630bp) protein (210aa)
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17)
Similar to phosphatidylethanolamine N-methyltransferase id=4866643 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_984_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2389..3249
DNA (861bp) protein (287aa)
LysM domain-containing protein 2; K08086 pilus assembly protein FimV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3634139 bin=GWC2_Methylomirabilis_70_16 species=Polysphondylium pallidum genus=Polysphondylium taxon_order=Dictyosteliida taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FecR protein
13_2_20cm_scaffold_984_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3353..4510
DNA (1158bp) protein (386aa)
LysM domain-containing protein 2; K08086 pilus assembly protein FimV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
WGS project CABT00000000 data, contig 2.14 id=3824668 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_984_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4571..6136)
DNA (1566bp) protein (522aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Exported protein id=3824666 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_984_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6133..7575)
DNA (1443bp) protein (481aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AtoC; response regulator; K07714 two-component system, NtrC family, response regulator AtoC id=14626375 bin=bin7_NC10_sister species=Desulfotignum phosphitoxidans genus=Desulfotignum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
Fis family transcriptional regulator
13_2_20cm_scaffold_984_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7572..8951)
DNA (1380bp) protein (460aa)
degQ; protease degQ (EC:3.4.21.-); K04772 serine protease DegQ [EC:3.4.21.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Protease Do id=4681947 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
degQ; periplasmic trypsin-like serine protease lipoprotein DegQ
13_2_20cm_scaffold_984_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9020..10336)
DNA (1317bp) protein (439aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA(Ile)-lysidine synthase id=4681946 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA(Ile)-lysidine synthetase
13_2_20cm_scaffold_984_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10395..11066)
DNA (672bp) protein (224aa)
moaDE; molybdopterin converting factor, subunits 1/2; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] id=14626372 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
MoaD family protein
13_2_20cm_scaffold_984_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11085..11411)
DNA (327bp) protein (109aa)
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) id=4681944 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yutM; hypothetical protein
13_2_20cm_scaffold_984_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11449..12168)
DNA (720bp) protein (240aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTP cyclohydrolase I id=4681943 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_2_20cm_scaffold_984_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12165..12746)
DNA (582bp) protein (194aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
folE; GTP cyclohydrolase I (EC:3.5.4.16) id=14626369 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
GTP cyclohydrolase (EC:3.5.4.16)
13_2_20cm_scaffold_984_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12743..13147)
DNA (405bp) protein (135aa)
pts; 6-pyruvoyl-tetrahydropterin synthase (EC:4.2.3.12); K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
6-carboxy-5,6,7,8-tetrahydropterin synthase id=4681942 bin=GWA2_Methylomirabilis_73_35 species=Gracilibacillus halophilus genus=Gracilibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_984_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13144..13560)
DNA (417bp) protein (139aa)
putative 6-pyruvoyl tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=4534447 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_984_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13557..14615)
DNA (1059bp) protein (353aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=4681940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_2_20cm_scaffold_984_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(14626..15072)
DNA (447bp) protein (149aa)
enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA hydratase/isomerase id=4681939 bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase
13_2_20cm_scaffold_984_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15050..15355)
DNA (306bp) protein (102aa)
enoyl-CoA hydratase/isomerase family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl-CoA hydratase/isomerase id=4534449 bin=GWF2_Methylomirabilis_70_14 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase/isomerase
13_2_20cm_scaffold_984_19
Entamoeba invadens, Entamoeba, Eukaryota

Not on your lists

15661..15942
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Entamoeba invadens RepID=S0B2P3_ENTIV
Uncharacterized protein {ECO:0000313|EMBL:BAN41723.1}; TaxID=33085 species="Eukaryota; Amoebozoa; Archamoebae; Entamoebidae; Entamoeba.;" source="Entamoeba invadens.;"
hypothetical protein
13_2_20cm_scaffold_984_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15973..16701
DNA (729bp) protein (243aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14626359 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_984_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16773..17093)
DNA (321bp) protein (107aa)
lipoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lipoprotein id=14626358 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lipoprotein
13_2_20cm_scaffold_984_22
unknown

Not on your lists

comp(17171..17491)
DNA (321bp) protein (107aa)

This feature has no annotations

13_2_20cm_scaffold_984_23
unknown

Not on your lists

comp(17488..17913)
DNA (426bp) protein (142aa)

This feature has no annotations

13_2_20cm_scaffold_984_24
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(18033..18986)
DNA (954bp) protein (318aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator id=14626361 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
13_2_20cm_scaffold_984_25
unknown

Not on your lists

comp(19681..19854)
DNA (174bp) protein (58aa)

This feature has no annotations

13_2_20cm_scaffold_984_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20399..21286
DNA (888bp) protein (296aa)
putative histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidine kinase id=4172270 bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS/PAC sensor hybrid histidine kinase
13_2_20cm_scaffold_984_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21283..21693
DNA (411bp) protein (137aa)
putative CheY-like response regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Multi-sensor hybrid histidine kinase id=4549114 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
chemotaxis protein CheY
13_2_20cm_scaffold_984_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21787..23673
DNA (1887bp) protein (629aa)
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A id=14626352 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
uvrA; excinuclease ABC subunit A
13_2_20cm_scaffold_984_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23633..24502
DNA (870bp) protein (290aa)
Excinuclease ABC, subunit A id=2589437 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
uvrA; excinuclease ABC subunit A
13_2_20cm_scaffold_984_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24593..25813
DNA (1221bp) protein (407aa)
propanoyl-CoA C-acyltransferase (EC:2.3.1.176) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative lipid-transfer protein id=2589435 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 888 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiolase
Displaying items 1-30 of 43 in total

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