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13_2_20cm_2_scaffold_1063

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1063_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(353..652)
DNA (300bp) protein (100aa)
ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4] Tax=GWC2_Rokubacteria_70_16_curated
Ribonuclease H id=4704588 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ribonuclease H
13_2_20cm_2_scaffold_1063_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(814..1527)
DNA (714bp) protein (238aa)
hypothetical protein id=14627037 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_2_scaffold_1063_trna_2
unknown

Not on your lists

comp(1694..1765)
DNA (72bp)
transferRNA
13_2_20cm_2_scaffold_1063_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1785..2468)
DNA (684bp) protein (228aa)
rpoD; RNA polymerase sigma factor rpod; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
rpoD; RNA polymerase sigma factor rpod; K03086 RNA polymerase primary sigma factor id=14627038 bin=bin7_NC10_sister species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
RNA polymerase sigma factor RpoD
13_2_20cm_2_scaffold_1063_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2465..3499)
DNA (1035bp) protein (345aa)
rpoD; RNA polymerase sigma factor RpoD (Sigma-70); K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor RpoD id=3357851 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpoD; RNA polymerase sigma factor RpoD (Sigma-70)
13_2_20cm_2_scaffold_1063_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3492..5360)
DNA (1869bp) protein (623aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA primase id=4785564 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA primase
13_2_20cm_2_scaffold_1063_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5363..7759)
DNA (2397bp) protein (799aa)
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 Tax=GWA2_Rokubacteria_73_35_curated
MutS2 protein id=3357842 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
MutS2 family protein
13_2_20cm_2_scaffold_1063_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7826..8020)
DNA (195bp) protein (65aa)
rpsU; 30S ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S21 id=4785572 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsU; 30S ribosomal protein S21
13_2_20cm_2_scaffold_1063_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8151..9395
DNA (1245bp) protein (415aa)
Transporter, UIT6 family id=4785574 bin=GWA2_Methylomirabilis_73_35 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_2_20cm_2_scaffold_1063_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9415..9939)
DNA (525bp) protein (175aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=GWA2_Rokubacteria_73_35_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=4785576 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1063_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(9955..10668)
DNA (714bp) protein (238aa)
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 id=14627044 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
13_2_20cm_2_scaffold_1063_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10691..11629)
DNA (939bp) protein (313aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=4526388 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1063_trna_1
unknown

Not on your lists

comp(11645..11723)
DNA (79bp)
transferRNA
13_2_20cm_2_scaffold_1063_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11738..12655)
DNA (918bp) protein (306aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=4948657 bin=GWC2_Methylomirabilis_70_24 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
13_2_20cm_2_scaffold_1063_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12671..13426)
DNA (756bp) protein (252aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4526381 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_1063_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13404..14291)
DNA (888bp) protein (296aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Tetratricopeptide repeat family protein id=4526378 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TPR domain-containing protein
13_2_20cm_2_scaffold_1063_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15022..15495)
DNA (474bp) protein (158aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4526375 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_1063_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15560..16852
DNA (1293bp) protein (431aa)
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] Tax=GWA2_Rokubacteria_73_35_curated
RNA methyltransferase id=3820160 bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNA methyltransferase
13_2_20cm_2_scaffold_1063_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16849..17766
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter permease
13_2_20cm_2_scaffold_1063_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

18180..18680
DNA (501bp) protein (167aa)
Binding-protein-dependent transport systems inner membrane component id=3820149 bin=GWC2_Methylomirabilis_70_16 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=GWC2_Rokubacteria_70_16_curated
oligopeptide ABC transporter permease
13_2_20cm_2_scaffold_1063_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18793..19431)
DNA (639bp) protein (213aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3950581 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
teicoplanin resistance protein VanZ
13_2_20cm_2_scaffold_1063_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19542..19799
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJU6_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_2_20cm_2_scaffold_1063_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19840..22203
DNA (2364bp) protein (788aa)
DEAD/DEAH box helicase; K06877 DEAD/DEAH box helicase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dead/deah box helicase id=4193701 bin=GWC2_Methylomirabilis_70_16 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dead/deah box helicase
13_2_20cm_2_scaffold_1063_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22213..23262
DNA (1050bp) protein (350aa)
hypothetical protein; K07502 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4526305 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_1063_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23310..23438)
DNA (129bp) protein (43aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC:1.1.1.26) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC:1.1.1.26) id=14627670 bin=bin7_NC10_sister species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=bin7_NC10_sister organism_group=NC10
Displaying 25 items

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