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13_2_20cm_2_scaffold_1190

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1190_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2..2437
DNA (2436bp) protein (812aa)
Putative outer membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9E4_GEMAT
TonB-dependent outer membrane protein, SusC/RagA
TonB-dependent outer membrane protein, SusC/RagA {ECO:0000313|EMBL:AHG89756.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_1190_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2448..3827
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9E3_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90169.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_1190_3
unknown

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comp(3887..4339)
DNA (453bp) protein (151aa)

This feature has no annotations

13_2_20cm_2_scaffold_1190_4
unknown

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comp(4352..4948)
DNA (597bp) protein (199aa)

This feature has no annotations

13_2_20cm_2_scaffold_1190_5

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5086..5967
DNA (882bp) protein (294aa)
WD40-like beta propeller protein n=1 Tax=uncultured bacterium RepID=D5MT79_9BACT
Marine sediment metagenome DNA, contig: S01H4_S01127 {ECO:0000313|EMBL:GAG79429.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
13_2_20cm_2_scaffold_1190_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(5974..6744)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC49_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40076.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_2_20cm_2_scaffold_1190_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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7123..10497
DNA (3375bp) protein (1125aa)
Putative outer membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6A2_GEMAT
putative outer membrane protein Tax=GWC2_Gemmatimonadetes_71_10_curated
putative outer membrane protein
13_2_20cm_2_scaffold_1190_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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11326..12240
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6A3_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_2_scaffold_1190_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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12252..12728
DNA (477bp) protein (159aa)
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_2_20cm_2_scaffold_1190_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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12725..13624
DNA (900bp) protein (300aa)
protein of unknown function DUF4397
Uncharacterized protein {ECO:0000313|EMBL:AHG89283.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_1190_11
Selenomonas infelix, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(13735..14025)
DNA (291bp) protein (97aa)
Peptidase, M23 family n=1 Tax=Selenomonas sp. CM52 RepID=J5XEB7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHG21558.1}; TaxID=679201 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas infelix ATCC 4353
peptidase M23/M37 family
13_2_20cm_2_scaffold_1190_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(14034..14528)
DNA (495bp) protein (165aa)
Metalloendopeptidase-like protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_2_20cm_2_scaffold_1190_13
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(14726..16276)
DNA (1551bp) protein (517aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionyl-tRNA synthetase {ECO:0000313|EMBL:BAH37776.1}; EC=6.1.1.10 {ECO:0000313|EMBL:BAH37776.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas
Methionyl-tRNA synthetase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6B6_GEMAT
13_2_20cm_2_scaffold_1190_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16269..17156)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6B7_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
PSP1 domain protein
13_2_20cm_2_scaffold_1190_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17158..18117)
DNA (960bp) protein (320aa)
accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=ACCA_GEMAT
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
13_2_20cm_2_scaffold_1190_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18121..21618)
DNA (3498bp) protein (1166aa)
dnaE; DNA polymerase III alpha subunit (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA polymerase III alpha subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6B9_GEMAT
DNA polymerase III, alpha subunit
13_2_20cm_2_scaffold_1190_17
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21623..22132)
DNA (510bp) protein (170aa)
phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC:3.5.4.19 3.6.1.31)
Histidine biosynthesis bifunctional protein HisIE n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AU68_RUBXD
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubr
13_2_20cm_2_scaffold_1190_18
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22310..23686
DNA (1377bp) protein (459aa)
hypothetical protein, partial n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B72EC4
Transporter {ECO:0000313|EMBL:AKF81623.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus
putative transporter
13_2_20cm_2_scaffold_1190_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

23787..25349
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AR33_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_2_scaffold_1190_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

25372..26106
DNA (735bp) protein (245aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_2_20cm_2_scaffold_1190_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

26094..27212
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C0_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
aminopeptidase
13_2_20cm_2_scaffold_1190_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(27209..28471)
DNA (1263bp) protein (421aa)
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] id=14625145 bin=bin7_NC10_sister species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamate dehydrogenase
13_2_20cm_2_scaffold_1190_23
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(28488..29612)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Microchaete sp. PCC 7126 RepID=UPI000347BAB9
TPR-repeat-containing protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_2_20cm_2_scaffold_1190_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

29683..31029
DNA (1347bp) protein (449aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZGV2_TERRK
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
13_2_20cm_2_scaffold_1190_25

Not on your lists

comp(31053..31670)
DNA (618bp) protein (206aa)
Molybdopterin binding protein n=1 Tax=uncultured bacterium F25-01 RepID=I3VIH3_9BACT
Molybdopterin binding protein {ECO:0000313|EMBL:AFK79179.1}; TaxID=1191433 species="Bacteria; environmental samples.;" source="uncultured bacterium F25-01.;"
oxidoreductase
13_2_20cm_2_scaffold_1190_26
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(31667..34006)
DNA (2340bp) protein (780aa)
penicillin amidase (EC:3.5.1.11)
Penicillin amidase {ECO:0000313|EMBL:ABJ86920.1}; EC=3.5.1.11 {ECO:0000313|EMBL:ABJ86920.1};; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacter
Penicillin amidase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01TV0_SOLUE
13_2_20cm_2_scaffold_1190_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(34012..34689)
DNA (678bp) protein (226aa)
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase B (EC:2.3.1.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Octanoyltransferase n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=LIPB_GLOVI
lipB; lipoyltransferase
13_2_20cm_2_scaffold_1190_28
unknown

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comp(34686..35105)
DNA (420bp) protein (140aa)

This feature has no annotations

13_2_20cm_2_scaffold_1190_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(35102..35473)
DNA (372bp) protein (124aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Dihydrolipoyl dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C7_GEMAT
dihydrolipoamide dehydrogenase
Displaying 29 items

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