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13_2_20cm_2_scaffold_1268

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1268_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..191)
DNA (189bp) protein (63aa)
Rhomboid family protein id=4029905 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Rhomboid family protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_2_scaffold_1268_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(193..942)
DNA (750bp) protein (250aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4029904 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1268_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1487..1783
DNA (297bp) protein (99aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4029901 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1268_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1764..2594)
DNA (831bp) protein (277aa)
aminopeptidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase id=4029897 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1268_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2591..3367)
DNA (777bp) protein (259aa)
TatD family deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Magnesium-dependent deoxyribonuclease, TatD family, and radical SAM domain iron-sulfur oxidoreductase id=4012843 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hydrolase TatD
13_2_20cm_2_scaffold_1268_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3364..3777)
DNA (414bp) protein (138aa)
acT domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acT domain-containing protein id=14429420 bin=bin3_NC10 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin3_NC10 organism_group=NC10
acT domain-containing protein
13_2_20cm_2_scaffold_1268_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3806..4069)
DNA (264bp) protein (88aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14626714 bin=bin7_NC10_sister species=Pseudomonas putida genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_2_scaffold_1268_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4066..4647)
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4657183 bin=GWA2_Methylomirabilis_73_35 species=Thauera linaloolentis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_1268_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(4644..6683)
DNA (2040bp) protein (680aa)
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=GWA2_Rokubacteria_73_35_curated
metG; methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) (EC:6.1.1.10)
Methionine--tRNA ligase id=4657185 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1268_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6680..7528)
DNA (849bp) protein (283aa)
putative PSP1-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tpl protein id=14626710 bin=bin7_NC10_sister species=Shuttleworthia satelles genus=Shuttleworthia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
PSP1 domain-containing protein
13_2_20cm_2_scaffold_1268_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7565..8257)
DNA (693bp) protein (231aa)
holB; DNA polymerase III subunit delta' (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit id=4657188 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1268_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8247..8873)
DNA (627bp) protein (209aa)
thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase id=4657189 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1268_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8917..9354)
DNA (438bp) protein (146aa)
h16_A2949; ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Extracellular solute-binding protein family 5 id=4793584 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_2_scaffold_1268_14
unknown

Not on your lists

9464..10462
DNA (999bp) protein (333aa)

This feature has no annotations

13_2_20cm_2_scaffold_1268_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10629..11354)
DNA (726bp) protein (242aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3301620 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_2_scaffold_1268_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11361..12182)
DNA (822bp) protein (274aa)
Putative ABC transporter permease protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFR4_9BACT
ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter permease
13_2_20cm_2_scaffold_1268_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12179..12907)
DNA (729bp) protein (243aa)
Putative sugar ABC transporter permease n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MV04_CORCM
thuF; putative sugar ABC transporter permease; K02025 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thuF; putative sugar ABC transporter permease
13_2_20cm_2_scaffold_1268_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12904..14190)
DNA (1287bp) protein (429aa)
Putative sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFR6_9BACT
sugar ABC transporter periplasmic sugar-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
sugar ABC transporter periplasmic sugar-binding protein
13_2_20cm_2_scaffold_1268_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14187..15716)
DNA (1530bp) protein (510aa)
1,4-alpha-glucan branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1,4-alpha-glucan branching enzyme GlgB id=4799905 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
trehalose synthase-like protein
13_2_20cm_2_scaffold_1268_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15691..16986)
DNA (1296bp) protein (432aa)
trehalose synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Trehalose synthase id=4882695 bin=GWC2_Methylomirabilis_70_24 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
trehalose synthase
13_2_20cm_2_scaffold_1268_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17261..18520)
DNA (1260bp) protein (420aa)
Glycosyl transferase, family 2 id=5032667 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase Tax=GWA2_Rokubacteria_73_35_curated
glycosyl transferase
13_2_20cm_2_scaffold_1268_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18517..19710)
DNA (1194bp) protein (398aa)
group 1 glycosyl transferase; K13057 trehalose synthase [EC:2.4.1.245] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=5032668 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_2_20cm_2_scaffold_1268_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19707..20372)
DNA (666bp) protein (222aa)
Uncharacterized protein id=5032669 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
cytoplasmic protein
13_2_20cm_2_scaffold_1268_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20377..21147)
DNA (771bp) protein (257aa)
Trehalose-phosphatase (Trehalose 6-phosphate phosphatase) (TPP) (EC:3.1.3.12) Tax=GWA2_Rokubacteria_73_35_curated
beta-phosphoglucomutase hydrolase (EC:2.4.1.216)
Beta-phosphoglucomutase hydrolase id=5032672 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1268_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21156..23393)
DNA (2238bp) protein (746aa)
alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) id=4183572 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1268_26
bacterium YEK0313, Bacteria

Not on your lists

23549..24322
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003657F9C
Lipopolysaccharide export system ATP-binding protein LptB {ECO:0000313|EMBL:CEJ11562.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
branched-chain amino acid ABC transporter ATPase
13_2_20cm_2_scaffold_1268_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24319..25038
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000376579D
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily protein {ECO:0000313|EMBL:KFC63463.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhiz
branched-chain amino acid ABC transporter ATPase
13_2_20cm_2_scaffold_1268_28
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25040..26239
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036DFB2D
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EKF44194.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="N
ABC transporter substrate-binding protein
13_2_20cm_2_scaffold_1268_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26268..27095
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037326F4
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:KFC63461.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
hydrophobic amino acid ABC transporter permease
13_2_20cm_2_scaffold_1268_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27112..27993
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037C2A85
ABC transporter integral membrane subunit {ECO:0000313|EMBL:EHJ95076.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
ABC transporter permease
Displaying 30 items

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