ggKbase home page

13_2_20cm_2_scaffold_13443

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_13443_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(23..1303)
DNA (1281bp) protein (427aa)
protein GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] id=14628076 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
protein GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
13_2_20cm_2_scaffold_13443_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1306..1698)
DNA (393bp) protein (131aa)
glycine cleavage system protein H id=4193475 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. m3-13 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=GWA2_Rokubacteria_73_35_curated
gcvH; glycine cleavage system H protein
13_2_20cm_2_scaffold_13443_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1710..2816)
DNA (1107bp) protein (369aa)
gcvT; glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10] Tax=GWA2_Rokubacteria_73_35_curated
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10)
Aminomethyltransferase id=4193474 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_13443_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

3013..4497
DNA (1485bp) protein (495aa)
Hemin-binding lipoprotein id=4813980 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dipeptide ABC transporter substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
dipeptide ABC transporter substrate-binding protein
13_2_20cm_2_scaffold_13443_5
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4680..5051)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8EAW4_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EMT52605.1}; TaxID=1300222 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus borstelensis AK1.;"
hypothetical protein
13_2_20cm_2_scaffold_13443_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5455..5766)
DNA (312bp) protein (104aa)
Uncharacterized protein id=4543822 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_2_20cm_2_scaffold_13443_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6182..6958)
DNA (777bp) protein (259aa)
LamB/YcsF family protein Tax=GWA2_Rokubacteria_70_23_curated
Lactam utilization-like protein (lamB); K07160 UPF0271 protein id=14628095 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Lactam utilization-like protein (lamB)
13_2_20cm_2_scaffold_13443_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6955..8286)
DNA (1332bp) protein (444aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] id=14628094 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=CSP1_6_Rokubacteria
glutamate-1-semialdehyde aminotransferase
13_2_20cm_2_scaffold_13443_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8291..9220)
DNA (930bp) protein (310aa)
Allophanate hydrolase subunit 2 id=4669076 bin=GWF2_Methylomirabilis_70_14 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
KipI antagonist
13_2_20cm_2_scaffold_13443_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9217..9906)
DNA (690bp) protein (230aa)
TIGR00370 family protein id=4669075 bin=GWF2_Methylomirabilis_70_14 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
putative regulatory protein
13_2_20cm_2_scaffold_13443_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9951..10574)
DNA (624bp) protein (208aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4213630 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_13443_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10816..11133)
DNA (318bp) protein (106aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=GWA2_Rokubacteria_73_35_curated
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase id=4213632 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_13443_13
Corynebacterium efficiens, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11274..11648
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:BAC18188.1}; TaxID=196164 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium efficiens (stra
13_2_20cm_2_scaffold_13443_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11722..12438)
DNA (717bp) protein (239aa)
Methyltransferase id=4213634 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative methyltransferase type 11 Tax=GWA2_Rokubacteria_73_35_curated
SAM-dependent methyltransferase
13_2_20cm_2_scaffold_13443_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12460..13437
DNA (978bp) protein (326aa)
NAD-dependent epimerase/dehydratase Tax=GWA2_Rokubacteria_73_35_curated
NAD-dependent epimerase/dehydratase id=4669071 bin=GWF2_Methylomirabilis_70_14 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NAD-dependent epimerase/dehydratase
13_2_20cm_2_scaffold_13443_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13440..13931
DNA (492bp) protein (164aa)
N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183] Tax=GWA2_Rokubacteria_73_35_curated
Transcriptional regulator, ArsR family id=4213638 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
N-acetyltransferase GCN5
13_2_20cm_2_scaffold_13443_17
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13941..14654
DNA (714bp) protein (238aa)
ABC transporter related n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8II64_METNO
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACL57933.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
13_2_20cm_2_scaffold_13443_18
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14662..15441
DNA (780bp) protein (260aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8II65_METNO
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACL57934.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
13_2_20cm_2_scaffold_13443_19
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15438..16523
DNA (1086bp) protein (362aa)
NMT1/THI5 like domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8II66_METNO
NMT1/THI5 like domain-containing protein
NMT1/THI5 like domain protein {ECO:0000313|EMBL:ACL57935.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.
Displaying 19 items

View Taxonomy