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13_2_20cm_2_scaffold_1478

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1478_1
Bacillus sp. OxB-1, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3..362)
DNA (360bp) protein (120aa)
aldehyde dehydrogenase n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003786FC8
NAD-dependent aldehyde dehydrogenase
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:BAQ11250.1}; TaxID=98228 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. (strain OxB-1).;"
13_2_20cm_2_scaffold_1478_2
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(454..936)
DNA (483bp) protein (161aa)
polymerase n=1 Tax=Chryseobacterium taeanense RepID=UPI000379A30E
Polymerase {ECO:0000313|EMBL:KEH07064.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
porin
13_2_20cm_2_scaffold_1478_3
unknown

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comp(923..1039)
DNA (117bp) protein (39aa)

This feature has no annotations

13_2_20cm_2_scaffold_1478_4
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1225..1674
DNA (450bp) protein (150aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000256|H
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI00037BDF60
13_2_20cm_2_scaffold_1478_5
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1763..2533
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003715137
4-hydroxyphenylpyruvate dioxygenase
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:AGW94465.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstoni
13_2_20cm_2_scaffold_1478_6
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

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2565..2885
DNA (321bp) protein (107aa)
nucleoside-diphosphate-sugar epimerase (EC:1.1.1.61) Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037DFE46
NAD-dependent epimerase/dehydratase
13_2_20cm_2_scaffold_1478_7
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2882..3385
DNA (504bp) protein (168aa)
nucleoside-diphosphate-sugar epimerase (EC:1.1.1.61) Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Ralstonia pickettii OR214 RepID=R0DZ02_RALPI
NAD-dependent epimerase/dehydratase
13_2_20cm_2_scaffold_1478_8
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3572..3736)
DNA (165bp) protein (55aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CN98_SIDLE
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADE12795.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Side
13_2_20cm_2_scaffold_1478_9
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3733..4260)
DNA (528bp) protein (176aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CN98_SIDLE
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADE12795.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Side
13_2_20cm_2_scaffold_1478_10
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4306..5712)
DNA (1407bp) protein (469aa)
Putative multidrug efflux transporter n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B0T8_AZOBR
Multidrug transporter MatE {ECO:0000313|EMBL:KDP84661.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp.
putative multidrug efflux transporter
13_2_20cm_2_scaffold_1478_11
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5863..6210)
DNA (348bp) protein (116aa)
Transcriptional regulator, MarR family n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QI69_METSZ
Scaffold12, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31365.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" s
MarR family transcriptional regulator
13_2_20cm_2_scaffold_1478_12
unknown

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comp(6813..6986)
DNA (174bp) protein (58aa)

This feature has no annotations

13_2_20cm_2_scaffold_1478_13
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8071..9219)
DNA (1149bp) protein (383aa)
putative methionine synthase, vitamin-B12 independent (EC:2.1.1.14)
Putative Methionine synthase, vitamin-B12 independent n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KYA2_THERP
methionine synthase (B12-independent) Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
13_2_20cm_2_scaffold_1478_14
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9212..10171)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZWA2_9PROT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
hypothetical protein
13_2_20cm_2_scaffold_1478_15
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10509..10778)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NR10_9DELT
transposase (IS1294 family protein) Tax=RBG_16_Betaproteobacteria_64_18_curated
putative transposase
13_2_20cm_2_scaffold_1478_16
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11065..12192)
DNA (1128bp) protein (376aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX08281.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Uncharacterized protein id=4761810 bin=GWA2_Elusimicrobia_69_24 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_2_20cm_2_scaffold_1478_17
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12419..13396
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B8H6_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36667.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella deni
13_2_20cm_2_scaffold_1478_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14149..15309
DNA (1161bp) protein (387aa)
histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_16_Betaproteobacteria_64_18_curated
Multi-sensor signal transduction histidine kinase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RNH6_ACCPU
histidine kinase
13_2_20cm_2_scaffold_1478_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15294..16673
DNA (1380bp) protein (460aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RNH7_ACCPU rbh
Fis family transcriptional regulator; K02667 two-component system, NtrC family, response regulator PilR Tax=RBG_16_Betaproteobacteria_64_18_curated
two component sigma-54 specific Fis family transcriptional regulator
13_2_20cm_2_scaffold_1478_20
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16674..17228
DNA (555bp) protein (185aa)
N-acetyl-anhydromuranmyl-L-alanine amidase; K03806 AmpD protein id=12496923 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
N-acetyl-anhydromuranmyl-L-alanine amidase
N-acetyl-anhydromuranmyl-L-alanine amidase {ECO:0000313|EMBL:BAO30783.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Su
13_2_20cm_2_scaffold_1478_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17484..17666
DNA (183bp) protein (61aa)
nrdA; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1) Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ribonucleoside-diphosphate reductase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZH91_9PROT
ribonucleoside-diphosphate reductase subunit alpha
Displaying 21 items

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