ggKbase home page

13_2_20cm_2_scaffold_1502

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1502_1
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(3..356)
DNA (354bp) protein (118aa)
K+ channel, pore region id=14630847 bin=bin9_gal15 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
K+ channel, pore region Tax=CSP1_3_Armatimonadetes
Ion transport 2 domain-containing protein
13_2_20cm_2_scaffold_1502_2
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(466..1416)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI00036835B0
Uncharacterized protein {ECO:0000313|EMBL:EGC99663.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. T
hypothetical protein
13_2_20cm_2_scaffold_1502_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1474..1728)
DNA (255bp) protein (85aa)
id=3659327 Tax=GWA2_Rokubacteria_73_35_curated
id=14626565 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_2_scaffold_1502_4
unknown

Not on your lists

comp(1931..2599)
DNA (669bp) protein (223aa)

This feature has no annotations

13_2_20cm_2_scaffold_1502_5
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

2838..3308
DNA (471bp) protein (157aa)
Transcriptional regulator, MarR family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZD5_9CHLR
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EFH81925.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Kted
MarR family transcriptional regulator
13_2_20cm_2_scaffold_1502_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

3305..3862
DNA (558bp) protein (186aa)
OmpA/MotB domain protein id=4034147 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain protein Tax=GWC2_Rokubacteria_70_16_curated
peptidoglycan-associated (lipo)protein-like protein
13_2_20cm_2_scaffold_1502_7
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(4153..5223)
DNA (1071bp) protein (357aa)
Acyltransferase 3 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM56_KORVE
acyltransferase
Acyltransferase 3 {ECO:0000313|EMBL:ABF42044.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Elli
13_2_20cm_2_scaffold_1502_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5349..5903)
DNA (555bp) protein (185aa)
id=2556866 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=3639818 Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_2_scaffold_1502_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6005..6322)
DNA (318bp) protein (106aa)
id=3938572 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=3938572 Tax=GWC2_Rokubacteria_70_16_curated
13_2_20cm_2_scaffold_1502_10
unknown

Not on your lists

6478..6774
DNA (297bp) protein (99aa)

This feature has no annotations

13_2_20cm_2_scaffold_1502_11
unknown

Not on your lists

6839..7105
DNA (267bp) protein (89aa)

This feature has no annotations

13_2_20cm_2_scaffold_1502_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7270..7557
DNA (288bp) protein (96aa)
RNP-1 like RNA-binding protein Tax=GWC2_Rokubacteria_70_16_curated
RNP-1 like RNA-binding protein id=3938573 bin=GWC2_Methylomirabilis_70_16 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNP-1 like RNA-binding protein
13_2_20cm_2_scaffold_1502_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7727..8248
DNA (522bp) protein (174aa)
id=3639818 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
id=3639818 Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_2_scaffold_1502_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8257..8601)
DNA (345bp) protein (115aa)
Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_2_scaffold_1502_15
unknown

Not on your lists

comp(8649..8834)
DNA (186bp) protein (62aa)

This feature has no annotations

13_2_20cm_2_scaffold_1502_16

Not on your lists

comp(8885..9196)
DNA (312bp) protein (104aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM98465.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein id=3485457 bin=GWB1_Spirochaetes_59_5 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
13_2_20cm_2_scaffold_1502_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9394..9711
DNA (318bp) protein (106aa)
id=14627830 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_2_20cm_2_scaffold_1502_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9863..10738
DNA (876bp) protein (292aa)
fatty acid desaturase Tax=GWA2_Rokubacteria_70_23_curated
Putative fatty acid desaturase id=4918777 bin=GWC2_Methylomirabilis_70_24 species=uncultured marine microorganism HF4000_APKG10H12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
fatty acid desaturase
13_2_20cm_2_scaffold_1502_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10791..11738)
DNA (948bp) protein (316aa)
oligopeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Peptide ABC transporter permease protein id=4775215 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter permease
13_2_20cm_2_scaffold_1502_20
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11758..12714)
DNA (957bp) protein (319aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW97109.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
ABC transporter permease id=3709817 bin=GWC2_Methylomirabilis_70_24 species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
glutathione ABC transporter permease
13_2_20cm_2_scaffold_1502_21
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12730..14415)
DNA (1686bp) protein (562aa)
Putative periplasmic dipeptide transport substrate-binding protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0H6_THERP
Uncharacterized protein {ECO:0000313|EMBL:ETW95976.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
putative periplasmic dipeptide transport substrate-binding protein
13_2_20cm_2_scaffold_1502_22
unknown

Not on your lists

14748..15062
DNA (315bp) protein (105aa)

This feature has no annotations

13_2_20cm_2_scaffold_1502_23
unknown

Not on your lists

15072..15320
DNA (249bp) protein (83aa)

This feature has no annotations

13_2_20cm_2_scaffold_1502_24
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(15541..16524)
DNA (984bp) protein (328aa)
diguanylate cyclase id=14431325 bin=bin3_NC10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
diguanylate cyclase Tax=CSP1_5_NC10
diguanylate cyclase
13_2_20cm_2_scaffold_1502_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

16849..18489
DNA (1641bp) protein (547aa)
General secretion pathway protein A n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKT1_9BACT rbh
exeA; General secretion pathway protein A
General secretion pathway protein A {ECO:0000313|EMBL:CBE67730.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;
13_2_20cm_2_scaffold_1502_26
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

18492..19169
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKT2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67731.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_2_20cm_2_scaffold_1502_27
unknown

Not on your lists

comp(19185..19388)
DNA (204bp) protein (68aa)

This feature has no annotations

13_2_20cm_2_scaffold_1502_28
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19457..19903
DNA (447bp) protein (149aa)
Uncharacterized protein n=2 Tax=Cupriavidus RepID=Q1LEV5_RALME
RmlC-like cupin domain-containing protein
RmlC-like cupin domain-containing protein {ECO:0000313|EMBL:EKZ98284.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="
13_2_20cm_2_scaffold_1502_29

Not on your lists

comp(19884..20774)
DNA (891bp) protein (297aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=G3CRG3_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:AEM45146.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
alpha/beta hydrolase domain-containing protein
13_2_20cm_2_scaffold_1502_30
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20894..22009
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034CA0DD
Uncharacterized protein {ECO:0000313|EMBL:ETX04634.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
TIM-barrel fold metal-dependent hydrolase
Displaying items 1-30 of 31 in total

View Taxonomy