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13_2_20cm_2_scaffold_17845

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_17845_1
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..2211
DNA (2211bp) protein (737aa)
Uncharacterized protein n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CIL0_SYNLT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI00875.1}; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocali
13_2_20cm_2_scaffold_17845_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2614..2802
DNA (189bp) protein (63aa)
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine triad (HIT) protein id=4334202 bin=GWA2_Methylomirabilis_73_35 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Hit family diadenosine tetraphosphate hydrolase
13_2_20cm_2_scaffold_17845_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3085..4437)
DNA (1353bp) protein (451aa)
peptidase S46 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase S46 id=2598295 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
periplasmic serine proteinase
13_2_20cm_2_scaffold_17845_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(4522..5094)
DNA (573bp) protein (191aa)
hypothetical protein id=2598292 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_2_20cm_2_scaffold_17845_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5397..6626
DNA (1230bp) protein (410aa)
peptidase M16 domain protein; K07263 zinc protease [EC:3.4.24.-] Tax=GWA2_Rokubacteria_73_35_curated
Peptidase M16 domain protein id=2598289 bin=GWA2_Methylomirabilis_73_35 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ymxG; M16 family peptidase
13_2_20cm_2_scaffold_17845_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6647..7282
DNA (636bp) protein (212aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
Peptidase M16B family, nonpeptidase-like protein id=2598286 bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_17845_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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7308..7760
DNA (453bp) protein (151aa)
processing peptidase (EC:3.4.24.64) Tax=GWA2_Rokubacteria_73_35_curated
Peptidase M16B family, nonpeptidase-like protein id=2598286 bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
processing protease
13_2_20cm_2_scaffold_17845_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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7757..8473
DNA (717bp) protein (239aa)
Putative peptidase, S54 (Rhomboid) family id=2598285 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase, S54 (Rhomboid) family Tax=GWA2_Rokubacteria_73_35_curated
peptidase, S54 (Rhomboid) family
13_2_20cm_2_scaffold_17845_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8473..10023
DNA (1551bp) protein (517aa)
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase id=2598283 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_17845_10
unknown

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comp(10212..10823)
DNA (612bp) protein (204aa)

This feature has no annotations

13_2_20cm_2_scaffold_17845_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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11108..11635
DNA (528bp) protein (176aa)
DNA repair and genetic recombination protein id=2598282 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recN; DNA repair and genetic recombination protein; K03631 DNA repair protein RecN (Recombination protein N) Tax=GWA2_Rokubacteria_73_35_curated
DNA replication and repair protein RecN
13_2_20cm_2_scaffold_17845_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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11664..14186
DNA (2523bp) protein (841aa)
secA; preprotein translocase subunit SecA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA id=14627675 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
secA; preprotein translocase subunit SecA
13_2_20cm_2_scaffold_17845_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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14134..14331
DNA (198bp) protein (66aa)
secA; preprotein translocase subunit SecA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein translocase subunit SecA id=4253316 bin=GWA2_Methylomirabilis_73_35 species=Fretibacterium fastidiosum genus=Fretibacterium taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein translocase subunit secA
13_2_20cm_2_scaffold_17845_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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14436..17843
DNA (3408bp) protein (1136aa)
condensin subunit Smc; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chromosome partition protein Smc id=4253318 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
condensin subunit Smc
13_2_20cm_2_scaffold_17845_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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17906..18748
DNA (843bp) protein (281aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, XRE family id=4879989 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_2_20cm_2_scaffold_17845_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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18745..19671
DNA (927bp) protein (309aa)
ftsY; signal recognition particle-docking protein ftsy; K03110 fused signal recognition particle receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal recognition particle receptor FtsY id=4253322 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsY; signal recognition particle-docking protein ftsy
13_2_20cm_2_scaffold_17845_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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19668..20936
DNA (1269bp) protein (423aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] T
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD id=4253324 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_17845_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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20933..21448
DNA (516bp) protein (172aa)
RibC; riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=GWA2_Rokubacteria_73_35_curated
Riboflavin synthase alpha chain (Fragment) id=4253327 bin=GWA2_Methylomirabilis_73_35 species=Heliobacillus mobilis genus=Heliobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
riboflavin synthase subunit alpha
13_2_20cm_2_scaffold_17845_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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21445..22656
DNA (1212bp) protein (404aa)
riboflavin biosynthesis protein RibA (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_cura
riboflavin biosynthesis GTP cyclohydrolase II RibA (EC:3.5.4.25)
Riboflavin biosynthesis protein RibA id=4253329 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_2_scaffold_17845_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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22658..22960
DNA (303bp) protein (101aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=GWA2_Rokubacteria_73_35_curated
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase id=4041875 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 20 items

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