ggKbase home page

13_2_20cm_2_scaffold_1809

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1809_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..951
DNA (951bp) protein (317aa)
Putative uncharacterized protein id=4853969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PDZ domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_2_scaffold_1809_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

965..2323
DNA (1359bp) protein (453aa)
engA; GTP-binding protein EngA; K03977 GTP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTPase Der id=4853970 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
small GTP-binding protein domain-containing protein
13_2_20cm_2_scaffold_1809_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2320..3189
DNA (870bp) protein (290aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4853971 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_2_scaffold_1809_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3197..4153
DNA (957bp) protein (319aa)
Blr0521 protein id=4853972 bin=GWA2_Methylomirabilis_73_35 species=Tropheryma whipplei genus=Tropheryma taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
alginate regulatory protein AlgP
13_2_20cm_2_scaffold_1809_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4163..4444
DNA (282bp) protein (94aa)
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, alpha subunit id=4853973 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ihfA-1; integration host factor subunit alpha
13_2_20cm_2_scaffold_1809_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4513..4806
DNA (294bp) protein (98aa)
Transcriptional regulator, MerR family id=4853974 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MerR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
regulatory protein MerR
13_2_20cm_2_scaffold_1809_trna_1
unknown

Not on your lists

4845..4918
DNA (74bp)
transferRNA
13_2_20cm_2_scaffold_1809_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4993..5583
DNA (591bp) protein (197aa)
surE; stationary phase survival protein SurE; K03787 5'-nucleotidase [EC:3.1.3.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5'-nucleotidase SurE id=4853975 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
surE; 5'(3')-nucleotidase/polyphosphatase
13_2_20cm_2_scaffold_1809_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5583..6239
DNA (657bp) protein (219aa)
protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein-L-isoaspartate O-methyltransferase 1 id=4853976 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
protein-L-isoaspartate O-methyltransferase
13_2_20cm_2_scaffold_1809_trna_2
unknown

Not on your lists

6270..6343
DNA (74bp)
transferRNA
13_2_20cm_2_scaffold_1809_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6415..6714
DNA (300bp) protein (100aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=GWA2_Rokubacteria_73_35_curated
Acylphosphatase id=4853977 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acylphosphatase
13_2_20cm_2_scaffold_1809_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6723..7541
DNA (819bp) protein (273aa)
peptidase M23B Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NlpD; membrane protein id=14626518 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M23B
13_2_20cm_2_scaffold_1809_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7534..8454
DNA (921bp) protein (307aa)
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=4853978 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas noxia genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-70 family RNA polymerase sigma factor
13_2_20cm_2_scaffold_1809_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8473..8967)
DNA (495bp) protein (165aa)
id=2696010 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=2696010 Tax=GWC2_Rokubacteria_70_16_curated
13_2_20cm_2_scaffold_1809_13
unknown

Not on your lists

comp(9070..9297)
DNA (228bp) protein (76aa)

This feature has no annotations

13_2_20cm_2_scaffold_1809_14
unknown

Not on your lists

comp(9412..9864)
DNA (453bp) protein (151aa)

This feature has no annotations

13_2_20cm_2_scaffold_1809_15
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

10738..11208
DNA (471bp) protein (157aa)
RNA polymerase-binding transcription factor DksA n=2 Tax=Pseudomonas protegens RepID=Q4K3F1_PSEF5
dksA; DnaK suppressor protein; K06204 DnaK suppressor protein Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
conjugal transfer protein TraR
13_2_20cm_2_scaffold_1809_16
unknown

Not on your lists

11310..11471
DNA (162bp) protein (54aa)

This feature has no annotations

13_2_20cm_2_scaffold_1809_17
unknown

Not on your lists

11471..11779
DNA (309bp) protein (103aa)

This feature has no annotations

13_2_20cm_2_scaffold_1809_trna_3
unknown

Not on your lists

12119..12192
DNA (74bp)
transferRNA
13_2_20cm_2_scaffold_1809_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(12590..13033)
DNA (444bp) protein (148aa)
lactoylglutathione lyase (EC:4.4.1.5)
lactoylglutathione lyase id=14430027 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
lactoylglutathione lyase Tax=CSP1_5_NC10
13_2_20cm_2_scaffold_1809_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(13044..13511)
DNA (468bp) protein (156aa)
Putative transcriptional regulator, ArsR family protein id=4759445 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus sp. HPC(L) genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
arsR; putative arsenical resistance operon repressor Tax=GWC2_Rokubacteria_70_16_curated
ArsR family transcriptional regulator
13_2_20cm_2_scaffold_1809_20
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(13666..13875)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-O11 RepID=UPI00036D3CC0
Tax=RBG_16_Actinobacteria_67_10_curated
13_2_20cm_2_scaffold_1809_21

Not on your lists

comp(13944..14510)
DNA (567bp) protein (189aa)
mgtA; Magnesium-transporting ATPase, P-type 1 (EC:3.6.3.2)
Magnesium-translocating P-type ATPase n=1 Tax=Rhodanobacter denitrificans RepID=I4WSP9_9GAMM
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48803.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 24 items

View Taxonomy