ggKbase home page

13_2_20cm_2_scaffold_1883

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1883_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1..1386
DNA (1386bp) protein (462aa)
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) id=4387242 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Carbon monoxide dehydrogenase large chain
13_2_20cm_2_scaffold_1883_2
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1383..2762
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI0003697D71
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EKT76920.1}; Flags: Fragment;; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus
AMP-dependent synthetase
13_2_20cm_2_scaffold_1883_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2746..3531
DNA (786bp) protein (262aa)
Beta-ketoadipate enol-lactone hydrolase (EC:3.1.1.24)
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:CDM23595.1}; EC=3.1.1.24 {ECO:0000313|EMBL:CDM23595.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Putative hydrolase n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GNR3_9ACTO
13_2_20cm_2_scaffold_1883_4
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3524..4279
DNA (756bp) protein (252aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y8T6_THEBD
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ADG89898.1}; TaxID=469371 species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC
13_2_20cm_2_scaffold_1883_5
Gordonia amarae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4276..5193
DNA (918bp) protein (306aa)
Putative oxidoreductase n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GNR2_9ACTO
Putative oxidoreductase {ECO:0000313|EMBL:GAB05237.1}; TaxID=1075090 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
5,10-methylene tetrahydromethanopterin reductase
13_2_20cm_2_scaffold_1883_6
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5178..5960)
DNA (783bp) protein (261aa)
short-chain dehydrogenase/reductase SDR Tax=CG_Delta_05
Short-chain dehydrogenase/reductase SDR id=3880340 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase
13_2_20cm_2_scaffold_1883_7
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

Not on your lists

comp(6019..7971)
DNA (1953bp) protein (651aa)
Band 7 protein n=3 Tax=Ralstonia RepID=B2UDD0_RALPJ
hypothetical protein Tax=RBG_13_Actinobacteria_55_18_curated
hypothetical protein
13_2_20cm_2_scaffold_1883_8
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(8138..9526)
DNA (1389bp) protein (463aa)
histidine kinase (EC:2.7.13.3)
Putative uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TQA9_9CHLR id=1244707 bin=RBG9 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
sensor-like histidine kinase Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
13_2_20cm_2_scaffold_1883_9
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(9689..11503)
DNA (1815bp) protein (605aa)
Putative F420-dependent oxidoreductase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U509_9CHLR
Putative F420-dependent oxidoreductase {ECO:0000313|EMBL:EFH81589.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Kted
luciferase-like protein
13_2_20cm_2_scaffold_1883_10
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

11562..12542
DNA (981bp) protein (327aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U627_OCEP5
pyridoxal-5'-phosphate-dependent protein beta subunit
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:ADR35848.1}; TaxID=670487 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oc
13_2_20cm_2_scaffold_1883_11
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12619..13470
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RCK8_FRAAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ64816.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
13_2_20cm_2_scaffold_1883_12
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

13474..13854
DNA (381bp) protein (127aa)
Putative signal transduction protein with CBS domains n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8AA28_IGNH4
signal transduction protein
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ABU81780.1}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" so
13_2_20cm_2_scaffold_1883_13
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

13859..14818
DNA (960bp) protein (320aa)
Rieske (2Fe-2S) iron-sulfur domain protein protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZR9_9CHLR
ring-hydroxylating dioxygenase, large terminal subunit Tax=RBG_16_Chloroflexi_57_11_curated
ring-hydroxylating dioxygenase, large terminal subunit
13_2_20cm_2_scaffold_1883_14
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14821..15129
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ4_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH98886.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
13_2_20cm_2_scaffold_1883_15
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

15265..16104
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Synechocystis sp. PCC 7509 RepID=L8KP76_9SYNC
Putative uncharacterized protein {ECO:0000313|EMBL:CBN55793.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506
hypothetical protein
13_2_20cm_2_scaffold_1883_16
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

16208..17002
DNA (795bp) protein (265aa)
Diacylglycerol kinase catalytic region n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TDU7_9CHLR
Diacylglycerol kinase family protein
Diacylglycerol kinase catalytic region {ECO:0000313|EMBL:EFH90229.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Kted
13_2_20cm_2_scaffold_1883_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

16999..17724
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI000377008B
PAP2 superfamily protein {ECO:0000313|EMBL:CDM66944.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Phosphatidic acid phosphatase type 2 domain-containing protein 1B
13_2_20cm_2_scaffold_1883_18
R_WOR_1_53_15, WOR-1, Bacteria

Not on your lists

17761..19176
DNA (1416bp) protein (472aa)
GAF sensor signal transduction histidine kinase (EC:2.7.13.3)
two-component hybrid sensor and regulator histidine kinase Tax=RIFCSPHIGHO2_01_FULL_WOR_1_53_15_curated
Two component system histidine kinase id=2027182 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
13_2_20cm_2_scaffold_1883_19
unknown

Not on your lists

19214..19513
DNA (300bp) protein (100aa)

This feature has no annotations

13_2_20cm_2_scaffold_1883_20
Kitasatospora cheerisanensis, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20123..20623
DNA (501bp) protein (167aa)
peroxiredoxin (EC:1.11.1.15)
glutathione peroxidase n=1 Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B73C20
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=1348663 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora cheerisanensis KCTC
13_2_20cm_2_scaffold_1883_21
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20680..22155)
DNA (1476bp) protein (492aa)
Peptidase S8 and S53 n=1 Tax=Streptomyces chartreusis RepID=UPI000262D9AE
Uncharacterized protein {ECO:0000313|EMBL:KJS53170.1}; TaxID=1615590 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus subsp.
protease-like protein
13_2_20cm_2_scaffold_1883_22
GWB1_OD1_41_7, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

22359..23396
DNA (1038bp) protein (346aa)
transmembrane_regions 13..35 id=138239 bin=ACD9 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=ACD9 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:KKS17085.1}; TaxID=1618981 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWB1_41_7.;"
13_2_20cm_2_scaffold_1883_23
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23393..23908)
DNA (516bp) protein (172aa)
Transcriptional regulator n=2 Tax=Burkholderia cenocepacia RepID=A2VQC8_9BURK
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ESS39700.1}; TaxID=1396830 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
MarR family transcriptional regulator
13_2_20cm_2_scaffold_1883_24
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24000..24401
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8L383_FRASN
Uncharacterized protein {ECO:0000313|EMBL:KJS56982.1}; TaxID=1615590 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus subsp.
hypothetical protein
Displaying 24 items

View Taxonomy