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13_2_20cm_2_scaffold_2007

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_2007_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(148..525)
DNA (378bp) protein (126aa)
Fimbrial protein pilin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Fimbrial protein pilin id=3526412 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fimbrial protein pilin
13_2_20cm_2_scaffold_2007_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(763..1806)
DNA (1044bp) protein (348aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4282852 bin=GWC2_Methylomirabilis_70_16 species=Natrialba asiatica genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_2_scaffold_2007_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1915..2202)
DNA (288bp) protein (96aa)
selenoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Uncharacterized protein id=3814678 bin=GWA2_Methylomirabilis_73_35 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_2007_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2216..2437)
DNA (222bp) protein (74aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3814680 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_2007_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2455..3759
DNA (1305bp) protein (435aa)
carbohydrate kinase FGGY; K00851 gluconokinase [EC:2.7.1.12] Tax=GWA2_Rokubacteria_73_35_curated
Carbohydrate kinase FGGY id=3814682 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbohydrate kinase FGGY
13_2_20cm_2_scaffold_2007_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3756..4529
DNA (774bp) protein (258aa)
pgl; 6-phosphogluconolactonase (EC:3.1.1.31) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pgl; 6-phosphogluconolactonase (EC:3.1.1.31)
6-phosphogluconolactonase (6PGL) id=3814683 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_2007_7
unknown

Not on your lists

comp(4364..4798)
DNA (435bp) protein (145aa)

This feature has no annotations

13_2_20cm_2_scaffold_2007_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4817..5959
DNA (1143bp) protein (381aa)
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] id=14625649 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
13_2_20cm_2_scaffold_2007_9
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

5916..6533
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WDG5_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ17794.1}; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp.
13_2_20cm_2_scaffold_2007_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6552..7289)
DNA (738bp) protein (246aa)
capsular exopolysaccharide family protein (EC:2.7.10.2)
capsular exopolysaccharide biosynthesis protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Capsular exopolysaccharide family id=1734868 bin=GWB2_Clostridiales_37_7 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
13_2_20cm_2_scaffold_2007_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7292..8680)
DNA (1389bp) protein (463aa)
capsular exopolysaccharide family protein (EC:2.7.10.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
capsular exopolysaccharide family protein (EC:2.7.10.2)
Capsular exopolysaccharide family id=4829212 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_2_scaffold_2007_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8677..9759)
DNA (1083bp) protein (361aa)
polysaccharide export protein; K01991 polysaccharide export outer membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Exopolysaccharide biosynthesis protein id=4829213 bin=GWC2_Methylomirabilis_70_16 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
polysaccharide export protein
13_2_20cm_2_scaffold_2007_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9811..11019)
DNA (1209bp) protein (403aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4761858 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_2_20cm_2_scaffold_2007_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11160..11567)
DNA (408bp) protein (136aa)
putative lipoprotein id=14625651 bin=bin7_NC10_sister species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative lipoprotein Tax=CSP1_6_Rokubacteria
13_2_20cm_2_scaffold_2007_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11615..13204)
DNA (1590bp) protein (530aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
D-3-phosphoglycerate dehydrogenase id=3870380 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-phosphoglycerate dehydrogenase
13_2_20cm_2_scaffold_2007_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13206..13964)
DNA (759bp) protein (253aa)
kduD; 2-deoxy-D-gluconate 3-dehydrogenase; K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative 2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase) id=3713938 bin=GWC2_Methylomirabilis_70_16 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
2-deoxy-D-gluconate 3-dehydrogenase
13_2_20cm_2_scaffold_2007_17
unknown

Not on your lists

14665..14862
DNA (198bp) protein (66aa)

This feature has no annotations

13_2_20cm_2_scaffold_2007_18
unknown

Not on your lists

14864..15127
DNA (264bp) protein (88aa)

This feature has no annotations

13_2_20cm_2_scaffold_2007_19
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15124..15786)
DNA (663bp) protein (221aa)
Sensor histidine kinase / response regulator n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8T2_9DELT
Sensor histidine kinase / response regulator {ECO:0000313|EMBL:EDM77742.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocys
hypothetical protein
13_2_20cm_2_scaffold_2007_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(15786..17147)
DNA (1362bp) protein (454aa)
acetoacetate metabolism regulatory protein AtoC n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036C7B55
response regulator in two-component regulatory system, sigma 54-dependent
Putative response regulator in two-component regulatory system, sigma 54-dependent {ECO:0000313|EMBL:CBE68926.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;
Displaying 20 items

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