ggKbase home page

13_2_20cm_2_scaffold_225

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_225_1
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

1..795
DNA (795bp) protein (265aa)
Glycoside hydrolase family 5 n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NYU1_GRAMM
glycoside hydrolase family protein
Glycoside hydrolase family 5 {ECO:0000313|EMBL:AEU34504.1}; Flags: Precursor;; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella
13_2_20cm_2_scaffold_225_2
unknown

Not on your lists

comp(913..1356)
DNA (444bp) protein (148aa)

This feature has no annotations

13_2_20cm_2_scaffold_225_3
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(1468..3585)
DNA (2118bp) protein (706aa)
Peptidase S9, prolyl oligopeptidase active site region n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISJ6_KORVE rbh
peptidase S9, prolyl oligopeptidase active site region
Peptidase S9, prolyl oligopeptidase active site region {ECO:0000313|EMBL:ABF40154.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" sourc
13_2_20cm_2_scaffold_225_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

3729..5999
DNA (2271bp) protein (757aa)
Glutamate carboxypeptidase II {ECO:0000313|EMBL:ABJ85541.1}; EC=3.4.17.21 {ECO:0000313|EMBL:ABJ85541.1};; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales
glutamate carboxypeptidase II (EC:3.4.17.21)
Glutamate carboxypeptidase II n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XS4_SOLUE rbh
13_2_20cm_2_scaffold_225_5
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(6027..7151)
DNA (1125bp) protein (375aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HA
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RLMN_KORVE
hypothetical protein
13_2_20cm_2_scaffold_225_6
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7361..8638
DNA (1278bp) protein (426aa)
Peptidase M16-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRD0_KORVE rbh
peptidase M16-like protein
Peptidase M16-like protein {ECO:0000313|EMBL:ABF40570.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (st
13_2_20cm_2_scaffold_225_7
unknown

Not on your lists

comp(8613..8993)
DNA (381bp) protein (127aa)

This feature has no annotations

13_2_20cm_2_scaffold_225_8
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(8987..9601)
DNA (615bp) protein (205aa)
Cyclic nucleotide-binding protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRJ9_KORVE
cyclic nucleotide-binding protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ABF40501.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versati
13_2_20cm_2_scaffold_225_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

9760..10563
DNA (804bp) protein (268aa)
Outer membrane transport energization protein TonB n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVE7_KORVE
TonB-like protein
Outer membrane transport energization protein TonB {ECO:0000313|EMBL:ABF39153.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="K
13_2_20cm_2_scaffold_225_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(10725..11756)
DNA (1032bp) protein (344aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Y05_SOLUE
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABJ85460.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Soliba
13_2_20cm_2_scaffold_225_11
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

11924..12385
DNA (462bp) protein (154aa)
Phosphatidylethanolamine-binding protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRR7_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PEBP family protein
13_2_20cm_2_scaffold_225_12
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12641..13432)
DNA (792bp) protein (264aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XP0_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:ETW98529.1}; Flags: Fragment;; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheone
response regulator receiver modulated diguanylate cyclase
13_2_20cm_2_scaffold_225_13
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13411..13635)
DNA (225bp) protein (75aa)
response regulator receiver protein Tax=RBG_16_Deltaproteobacteria_49_23_curated
13_2_20cm_2_scaffold_225_14
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(13632..13877)
DNA (246bp) protein (82aa)
PAS domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
13_2_20cm_2_scaffold_225_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13972..14292
DNA (321bp) protein (107aa)
Two-component response regulator id=4558725 bin=GWA2_Methylomirabilis_73_35 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
winged helix family two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=GWA2_Rokubacteria_73_35_curated
response regulator receiver modulated diguanylate cyclase
13_2_20cm_2_scaffold_225_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(14289..14576)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000379637A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF41424.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_2_20cm_2_scaffold_225_17
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(14637..15509)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036687D8
5'-3' exonuclease
5'-3' exonuclease {ECO:0000313|EMBL:ABJ83748.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (str
13_2_20cm_2_scaffold_225_18
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(15537..16541)
DNA (1005bp) protein (335aa)
Streptogramin lyase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SK50_RHOMR
lyase -like protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
streptogramin lyase
13_2_20cm_2_scaffold_225_19
unknown

Not on your lists

17454..17639
DNA (186bp) protein (62aa)

This feature has no annotations

13_2_20cm_2_scaffold_225_20
unknown

Not on your lists

comp(17707..17871)
DNA (165bp) protein (55aa)

This feature has no annotations

13_2_20cm_2_scaffold_225_21
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

18491..19327
DNA (837bp) protein (279aa)
carbon monoxide dehydrogenase, medium subunit; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QF69_9FIRM
carbon monoxide dehydrogenase, medium subunit
13_2_20cm_2_scaffold_225_22
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19320..19808
DNA (489bp) protein (163aa)
(2Fe-2S)-binding domain-containing protein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGF2_THEM7
(2Fe-2S)-binding domain-containing protein
(2Fe-2S)-binding domain-containing protein {ECO:0000313|EMBL:ADU51604.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobac
13_2_20cm_2_scaffold_225_23

Not on your lists

19812..22274
DNA (2463bp) protein (821aa)
Putative aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein n=1 Tax=uncultured bacterium RepID=B1A2D3_9BACT rbh
Putative aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein {ECO:0000313|EMBL:ABZ79365.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
13_2_20cm_2_scaffold_225_24
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

22326..23279
DNA (954bp) protein (318aa)
2-dehydropantoate 2-reductase; K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003730EBA
2-dehydropantoate 2-reductase
13_2_20cm_2_scaffold_225_25
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

23305..24489
DNA (1185bp) protein (395aa)
dipeptidase n=1 Tax=Brevibacillus brevis RepID=UPI0003735042
peptidase M24 Tax=RBG_16_Chloroflexi_54_18_curated
Xaa-Pro dipeptidase/Xaa-Pro aminopeptidase
13_2_20cm_2_scaffold_225_26
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

24509..25774
DNA (1266bp) protein (422aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6NAJ6_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ49352.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum
hypothetical protein
13_2_20cm_2_scaffold_225_27
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

25889..26980
DNA (1092bp) protein (364aa)
Proline dipeptidase (Fragment) n=1 Tax=mine drainage metagenome RepID=T1B4A8_9ZZZZ
Proline dipeptidase (Fragment) Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein
13_2_20cm_2_scaffold_225_28
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

27049..27972
DNA (924bp) protein (308aa)
apbA; 2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003730EBA
2-dehydropantoate 2-reductase
13_2_20cm_2_scaffold_225_29
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28050..29117
DNA (1068bp) protein (356aa)
5%2C10-methylenetetrahydromethanopterin reductase {ECO:0000313|EMBL:CKH46779.1}; EC=1.1.98.2 {ECO:0000313|EMBL:CKH46779.1};; EC=1.5.98.2 {ECO:0000313|EMBL:CKH46779.1};; TaxID=1772 species="Bacteria; A
5,10-methylenetetrahydromethanopterin reductase (EC:1.5.99.11)
5,10-methylenetetrahydromethanopterin reductase n=1 Tax=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) RepID=A0QU73_MYCS2
13_2_20cm_2_scaffold_225_30
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29137..30165)
DNA (1029bp) protein (343aa)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase {ECO:0000313|EMBL:AFP38522.1}; EC=5.3.3.10 {ECO:0000313|EMBL:AFP38522.1};; Fumarylacetoacetate hydrolase family protein {ECO:0000313|EMBL:ABK71272.1};
hypothetical protein n=1 Tax=Streptomyces prunicolor RepID=UPI00035CDE43
fumarylacetoacetate hydrolase
Displaying items 1-30 of 34 in total

View Taxonomy