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13_2_20cm_2_scaffold_2404

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_2404_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

2..1219
DNA (1218bp) protein (406aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
DNA gyrase subunit A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5L6_GEMAT
DNA gyrase subunit A
13_2_20cm_2_scaffold_2404_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1221..2150
DNA (930bp) protein (310aa)
serine/threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Threonine dehydratase n=1 Tax=Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) RepID=C7MZ34_SACVD
Pyridoxal-5'-phosphate-dependent protein beta subunit
13_2_20cm_2_scaffold_2404_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

2156..3595
DNA (1440bp) protein (480aa)
Putative two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5L7_GEMAT rbh
putative two-component response regulator; K02488 two-component system, cell cycle response regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
putative two-component response regulator
13_2_20cm_2_scaffold_2404_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3592..4656
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XR22_SORCE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_2_20cm_2_scaffold_2404_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

4716..5759
DNA (1044bp) protein (348aa)
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type subunit alpha (EC:1.2.4.1); K00166 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [EC:1.2.4.4]
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type subunit alpha (EC:1.2.4.1)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHD8_CHLTF
13_2_20cm_2_scaffold_2404_6
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

5749..6516
DNA (768bp) protein (256aa)
Carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RBG_16_Spirochaete_67_19_curated
Dienelactone hydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9Q3_9BACT
Dienelactone hydrolase-related enzyme
13_2_20cm_2_scaffold_2404_7
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6580..7704)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DZW3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU82735.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG
peptidase S41
13_2_20cm_2_scaffold_2404_8
Paenibacillus sp. FSL R5-808, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7883..9025
DNA (1143bp) protein (381aa)
Serine/threonine protein phosphatase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MIN9_CORCM
Metallophosphoesterase {ECO:0000313|EMBL:ETT29757.1}; TaxID=1227076 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-808.;"
yaeI; serine/threonine protein phosphatase
13_2_20cm_2_scaffold_2404_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9087..9665)
DNA (579bp) protein (193aa)
TetR family transcriptional regulator n=1 Tax=Nocardiopsis ganjiahuensis RepID=UPI00037AED96
TetR/AcrR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
TetR-family transcriptional regulator
13_2_20cm_2_scaffold_2404_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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9783..10916
DNA (1134bp) protein (378aa)
Saccharopine dehydrogenase family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5N3_GEMAT
Saccharopine dehydrogenase
Saccharopine dehydrogenase {ECO:0000313|EMBL:AHG89937.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_2_scaffold_2404_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

10959..11507
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AFV3_IGNAJ
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_2_20cm_2_scaffold_2404_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11551..12660)
DNA (1110bp) protein (370aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_2_20cm_2_scaffold_2404_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12674..13735)
DNA (1062bp) protein (354aa)
Putative asparaginase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5P9_GEMAT
putative asparaginase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative asparaginase
13_2_20cm_2_scaffold_2404_14
unknown

Not on your lists

13835..14299
DNA (465bp) protein (155aa)

This feature has no annotations

13_2_20cm_2_scaffold_2404_15
Desulfohalobium retbaense, Desulfohalobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14296..14871
DNA (576bp) protein (192aa)
Glycosyl transferase family 2 n=1 Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X4F5_DESRD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACV69429.1}; TaxID=485915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae; Desulfohalobium.;" source="Des
13_2_20cm_2_scaffold_2404_16
unknown

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14886..15206
DNA (321bp) protein (107aa)

This feature has no annotations

13_2_20cm_2_scaffold_2404_17
unknown

Not on your lists

15184..16071
DNA (888bp) protein (296aa)

This feature has no annotations

13_2_20cm_2_scaffold_2404_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

16091..17149
DNA (1059bp) protein (353aa)
quinolinate phosphoribosyl transferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Quinolinate phosphoribosyl transferase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2Y5_CONWI
quinolinate phosphoribosyl transferase
13_2_20cm_2_scaffold_2404_19
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(17181..19181)
DNA (2001bp) protein (667aa)
tolB; peptidase S9 prolyl oligopeptidase active site domain protein (EC:3.4.19.1)
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:AGY58328.1}; EC=3.4.19.1 {ECO:0000313|EMBL:AGY58328.1};; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria;
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QHI7_9CYAN
13_2_20cm_2_scaffold_2404_20
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19239..20198
DNA (960bp) protein (320aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_0015
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4N9_GEMAT
13_2_20cm_2_scaffold_2404_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

20874..22037
DNA (1164bp) protein (388aa)
argD; acetylornithine/succinyldiaminopimelate aminotransferase (EC:2.6.1.11 2.6.1.17); K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] Tax=RBG_16_Gemmatimonade
argD; acetylornithine/succinyldiaminopimelate aminotransferase (EC:2.6.1.11 2.6.1.17)
Acetylornithine aminotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4P1_GEMAT
13_2_20cm_2_scaffold_2404_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

22199..22603
DNA (405bp) protein (135aa)
N-acetyltransferase GCN5; K00619 amino-acid N-acetyltransferase [EC:2.3.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
acetyltransferase (EC:2.3.1.1)
Argininosuccinate lyase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=ARLY_ROSCS id=5225765 bin=16ft_combo_ws3_JS1 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_2_20cm_2_scaffold_2404_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

22706..23371
DNA (666bp) protein (222aa)
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Isochorismatase hydrolase id=5800721 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
13_2_20cm_2_scaffold_2404_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

23368..24471
DNA (1104bp) protein (368aa)
Transaminase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4S4_GEMAT
transaminase Tax=RBG_16_Gemmatimonadetes_66_8_curated
aminotransferase class V
13_2_20cm_2_scaffold_2404_25
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(24402..24980)
DNA (579bp) protein (193aa)
Uncharacterized protein Tax=RBG_16_Planctomycetes_55_9_curated
13_2_20cm_2_scaffold_2404_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

25442..25933
DNA (492bp) protein (164aa)
3-phosphoglycerate dehydrogenase, partial n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036BEAD0
D-3-phosphoglycerate dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
D-3-phosphoglycerate dehydrogenase
13_2_20cm_2_scaffold_2404_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(25980..27959)
DNA (1980bp) protein (660aa)
Chemotaxis sensory transducer n=1 Tax=Pelosinus fermentans JBW45 RepID=I8TQS1_9FIRM
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein Tax=GWC2_Gemmatimonadetes_71_10_curated
methyl-accepting chemotaxis sensory transducer with Cache sensor
13_2_20cm_2_scaffold_2404_28
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists


28028..29632
DNA (1605bp) protein (535aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RBG_16_Acidobacteria_68_9_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Q0_GEMAT
Displaying 28 items

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