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13_2_20cm_2_scaffold_2513

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_2513_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1..432
DNA (432bp) protein (144aa)
Metal dependent phosphohydrolase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SJK6_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
metal dependent phosphohydrolase
13_2_20cm_2_scaffold_2513_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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429..1835
DNA (1407bp) protein (469aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NES6_9GAMM
phospholipase D/transphosphatidylase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phospholipase
13_2_20cm_2_scaffold_2513_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1828..2424
DNA (597bp) protein (199aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Q9_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor, sigma-70 family
13_2_20cm_2_scaffold_2513_4
unknown

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2421..2762
DNA (342bp) protein (114aa)

This feature has no annotations

13_2_20cm_2_scaffold_2513_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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2784..3197
DNA (414bp) protein (138aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein id=3180377 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_2_20cm_2_scaffold_2513_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3194..4510
DNA (1317bp) protein (439aa)
Putative outer membrane macrolide efflux protein n=2 Tax=Myxococcus RepID=Q1D4Q0_MYXXD id=5224473 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane macrolide efflux protein Tax=RBG_16_RIF_WS3X_71_46_curated
outer membrane efflux protein
13_2_20cm_2_scaffold_2513_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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4507..5250
DNA (744bp) protein (248aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7H8_GEMAT
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative ABC transporter ATP-binding protein
13_2_20cm_2_scaffold_2513_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5247..6716
DNA (1470bp) protein (490aa)
Macrolide-specific efflux protein MacA n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FQP0_STIAD id=5224472 bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
macrolide-specific efflux protein maca; K02005 HlyD family secretion protein Tax=RBG_16_RIF_WS3X_71_46_curated
RND family efflux transporter MFP subunit
13_2_20cm_2_scaffold_2513_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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6719..7822
DNA (1104bp) protein (368aa)
Putative macrolide efflux ABC transporter permease n=3 Tax=Myxococcus RepID=F8CKF2_MYXFH id=5224471 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein; K02004 putative ABC transport system permease protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_2_20cm_2_scaffold_2513_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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8113..10239
DNA (2127bp) protein (709aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE0_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_2_20cm_2_scaffold_2513_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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10283..11911
DNA (1629bp) protein (543aa)
Methyl-accepting chemotaxis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H1_GEMAT
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
methyl-accepting chemotaxis protein
13_2_20cm_2_scaffold_2513_12
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12578..14122)
DNA (1545bp) protein (515aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQU8_KYRT2
amidohydrolase domain-containing protein Tax=RBG_16_Deltaproteobacteria_71_12_curated
amidohydrolase
13_2_20cm_2_scaffold_2513_13
unknown

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comp(14127..14645)
DNA (519bp) protein (173aa)

This feature has no annotations

13_2_20cm_2_scaffold_2513_14
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

14905..15708
DNA (804bp) protein (268aa)
Alpha/beta hydrolase fold protein n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BBN9_MEISD
bioH; pimeloyl-CoA synthesis protein Tax=RBG_16_Chloroflexi_63_12_curated
hypothetical protein
13_2_20cm_2_scaffold_2513_15
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

15736..16434
DNA (699bp) protein (233aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA n=1 Tax=Rivularia sp. PCC 7116 RepID=K9RMS2_9CYAN
Haloacid dehalogenase {ECO:0000313|EMBL:KIE12424.1}; TaxID=1479485 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
haloacid dehalogenase superfamily protein
13_2_20cm_2_scaffold_2513_16
unknown

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comp(16431..16802)
DNA (372bp) protein (124aa)

This feature has no annotations

13_2_20cm_2_scaffold_2513_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

16966..17490
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UT59_ROSS1
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative restriction endonuclease
13_2_20cm_2_scaffold_2513_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17496..19448)
DNA (1953bp) protein (651aa)
4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) (EC:2.4.1.25) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
4-alpha-glucanotransferase n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=MALQ_THEKO
4-alpha-glucanotransferase
13_2_20cm_2_scaffold_2513_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(19450..20883)
DNA (1434bp) protein (478aa)
Protein of unknown function DUF3536
Uncharacterized protein {ECO:0000313|EMBL:AHG87964.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Glycoside hydrolase family 57 id=3927642 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_2513_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(20889..21215)
DNA (327bp) protein (109aa)
putative alpha-amylase (EC:3.2.1.1) id=24483490 bin=RBG_19FT_COMBO_GAL15_69_19 species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
glycoside hydrolase family protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
alpha-amylase
Displaying 20 items

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