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13_2_20cm_2_scaffold_3381

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_3381_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..577)
DNA (576bp) protein (192aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thioredoxin reductase id=4115297 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioredoxin reductase
13_2_20cm_2_scaffold_3381_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(701..952)
DNA (252bp) protein (84aa)
HAD superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 id=4115296 bin=GWA2_Methylomirabilis_73_35 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase
13_2_20cm_2_scaffold_3381_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(915..1319)
DNA (405bp) protein (135aa)
HAD superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 id=4115296 bin=GWA2_Methylomirabilis_73_35 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_3381_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1319..1720)
DNA (402bp) protein (134aa)
Putative uncharacterized protein id=4115295 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_2_20cm_2_scaffold_3381_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1713..2456)
DNA (744bp) protein (248aa)
Putative uncharacterized protein id=4115294 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein; K00782 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_2_scaffold_3381_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2453..2752)
DNA (300bp) protein (100aa)
iron-sulfur cluster binding protein Tax=GWA2_Rokubacteria_73_35_curated
(4Fe-4S) cluster-containing protein id=4115293 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Iron-sulfur cluster binding protein
13_2_20cm_2_scaffold_3381_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2709..3725)
DNA (1017bp) protein (339aa)
Iron-sulfur cluster binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Iron-sulfur cluster binding protein id=4143457 bin=GWF2_Methylomirabilis_70_14 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron-sulfur cluster binding protein
13_2_20cm_2_scaffold_3381_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3722..4450)
DNA (729bp) protein (243aa)
Putative uncharacterized protein id=4115292 bin=GWA2_Methylomirabilis_73_35 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_2_scaffold_3381_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4447..4770)
DNA (324bp) protein (108aa)
Cupin domain protein id=4143459 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cupin domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
cupin domain-containing protein
13_2_20cm_2_scaffold_3381_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4754..6001)
DNA (1248bp) protein (416aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4115290 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_3381_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6001..7320)
DNA (1320bp) protein (440aa)
FAD linked oxidase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
FAD linked oxidase-like protein id=4115289 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
FAD linked oxidase-like protein
13_2_20cm_2_scaffold_3381_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7327..8772)
DNA (1446bp) protein (482aa)
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15)
Glycolate oxidase, subunit GlcD id=4143462 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_2_scaffold_3381_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8795..9823)
DNA (1029bp) protein (343aa)
thiamine pyrophosphate domain-containing TPP-binding protein; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] Tax=GWA2_Rokubacteria_73_35_curated
2-oxoglutarate ferredoxin oxidoreductase subunit beta id=4115287 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
thiamine pyrophosphate domain-containing TPP-binding protein
13_2_20cm_2_scaffold_3381_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9820..10497)
DNA (678bp) protein (226aa)
2-oxoacid:acceptor oxidoreductase subunit alpha (EC:1.2.7.3); K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha (EC:1.2.7.3)
2-oxoglutarate ferredoxin oxidoreductase subunit alpha id=4115286 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_3381_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10464..11288)
DNA (825bp) protein (275aa)
2-oxoacid:acceptor oxidoreductase subunit alpha (EC:1.2.7.3); K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=GWA2_Rokubacteria_73_35_curated
2-oxoglutarate ferredoxin oxidoreductase subunit alpha id=4115286 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
13_2_20cm_2_scaffold_3381_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11285..11461)
DNA (177bp) protein (59aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
2-oxoglutarate ferredoxin oxidoreductase subunit alpha id=4003303 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
2-oxoglutarate ferredoxin oxidoreductase subunit alpha
13_2_20cm_2_scaffold_3381_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11651..12196)
DNA (546bp) protein (182aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Hypothetical conserved protein id=4115285 bin=GWA2_Methylomirabilis_73_35 species=uncultured alpha proteobacterium genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_3381_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12218..13174)
DNA (957bp) protein (319aa)
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
LysR substrate-binding protein id=4115284 bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_2_20cm_2_scaffold_3381_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13276..14766
DNA (1491bp) protein (497aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain (NADPH-GOGAT) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM42_9BACT
Displaying 19 items

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