ggKbase home page

13_2_20cm_2_scaffold_3857

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_3857_1
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

1..453
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Crenarchaeota archaeon SCGC AAA471-O08 RepID=UPI0003656672
serine hydroxymethyltransferase
Serine hydroxymethyltransferase {ECO:0000313|EMBL:BAJ48846.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum
13_2_20cm_2_scaffold_3857_2
unknown

Not on your lists

536..709
DNA (174bp) protein (58aa)

This feature has no annotations

13_2_20cm_2_scaffold_3857_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(923..1525)
DNA (603bp) protein (201aa)
Transcriptional regulator containing HTH domain n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RXG4_CENSY
putative transcriptional regulator; K06024 segregation and condensation protein B Tax=RBG_16_Archaea_50_20_curated
transcriptional regulator containing HTH domain
13_2_20cm_2_scaffold_3857_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(1503..2180)
DNA (678bp) protein (226aa)
Condensin subunit ScpA n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TVH0_9ARCH
segregation and condensation protein A; K05896 segregation and condensation protein A Tax=RBG_16_Archaea_50_20_curated
segregation and condensation protein A
13_2_20cm_2_scaffold_3857_5
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(2177..4855)
DNA (2679bp) protein (893aa)
Chromosome partition protein Smc n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O59462_PYRHO
chromosome segregation protein smc; K03529 chromosome segregation protein Tax=RBG_16_Bathyarchaeota_48_13_curated
chromosome assembly protein
13_2_20cm_2_scaffold_3857_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(5185..5463)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Salinicoccus albus RepID=UPI00037AF4C1
chromosome segregation protein smc1; K03529 chromosome segregation protein Tax=RBG_16_Archaea_50_20_curated
condensin subunit Smc
13_2_20cm_2_scaffold_3857_7
unknown

Not on your lists

comp(5575..6153)
DNA (579bp) protein (193aa)

This feature has no annotations

13_2_20cm_2_scaffold_3857_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(6212..6994)
DNA (783bp) protein (261aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K15888 tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] Tax=RBG_16_Archaea_50_20_curated
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
hypothetical protein n=1 Tax=Crenarchaeota archaeon SCGC AAA471-L14 RepID=UPI0003793FA5
13_2_20cm_2_scaffold_3857_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(6994..7797)
DNA (804bp) protein (268aa)
Pnp; purine nucleoside phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RBG_16_Archaea_50_20_curated
Probable 6-oxopurine nucleoside phosphorylase n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AHG6_PYRYC
5'-methylthioadenosine phosphorylase
13_2_20cm_2_scaffold_3857_10
Metallosphaera yellowstonensis, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(7794..8561)
DNA (768bp) protein (256aa)
Putative coiled-coil protein n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C8G9_9CREN
Putative coiled-coil protein {ECO:0000313|EMBL:EHP68445.1}; TaxID=671065 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Metallosphaera.;" source="Metallosphaera yellowston
hypothetical protein
13_2_20cm_2_scaffold_3857_11
Thermococcus kodakarensis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

8717..9355
DNA (639bp) protein (213aa)
Predicted signaling protein, TraB family n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JE55_THEKO
hypothetical protein
Predicted signaling protein, TraB family {ECO:0000313|EMBL:BAD85302.1}; TaxID=69014 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus
13_2_20cm_2_scaffold_3857_12
unknown

Not on your lists

comp(9389..10237)
DNA (849bp) protein (283aa)

This feature has no annotations

13_2_20cm_2_scaffold_3857_13
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(10647..12074)
DNA (1428bp) protein (476aa)
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
DUF87 domain-containing protein id=2756267 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Nitrososphaera gargensis genus=Nitrososphaera taxon_order=Nitrososphaerales taxon_class=unknown phylum=Thaumarchaeota tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
putative ATPase
13_2_20cm_2_scaffold_3857_14
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(12077..13063)
DNA (987bp) protein (329aa)
NurA domain-containing protein Tax=RBG_13_Bathyarchaeota_38_9_curated
putative NurA domain-containing protein
13_2_20cm_2_scaffold_3857_15
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(13131..13667)
DNA (537bp) protein (179aa)
Tax=RBG_13_Bathyarchaeota_38_9_curated
13_2_20cm_2_scaffold_3857_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(13673..14221)
DNA (549bp) protein (183aa)
Putative uncharacterized protein Tax=RBG_16_Archaea_50_20_curated
13_2_20cm_2_scaffold_3857_17
unknown

Not on your lists

14465..14713
DNA (249bp) protein (83aa)

This feature has no annotations

13_2_20cm_2_scaffold_3857_18
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(14706..15206)
DNA (501bp) protein (167aa)
Tax=RBG_13_Bathyarchaeota_38_9_curated
13_2_20cm_2_scaffold_3857_19

Not on your lists

15330..15839
DNA (510bp) protein (170aa)
MscS Mechanosensitive ion channel n=1 Tax=mine drainage metagenome RepID=T1C7H5_9ZZZZ
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:EQD76843.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
mechanosensitive ion channel protein MscS
13_2_20cm_2_scaffold_3857_20
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15962..17773)
DNA (1812bp) protein (604aa)
Amidase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISX8_KORVE
amidase
Amidase {ECO:0000313|EMBL:ABF40022.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (st
13_2_20cm_2_scaffold_3857_21
Candidatus Parvarchaeum acidophilus, Candidatus Parvarchaeum, Parvarchaeota, Archaea

Not on your lists

comp(17915..19030)
DNA (1116bp) protein (372aa)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVM4_9EURY
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EFD92764.1}; TaxID=662762 species="Archaea; Parvarchaeota; Candidatus Parvarchaeum.;" source="Candidatus Parvarchaeum acidoph
MIP family channel protein
13_2_20cm_2_scaffold_3857_22
unknown

Not on your lists

comp(19571..19645)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 22 items

View Taxonomy