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13_2_20cm_2_scaffold_4583

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_4583_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1..411
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7N2_GEMAT
TolB protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
surface antigen (D15)
13_2_20cm_2_scaffold_4583_2
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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667..1965
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M8_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH38238.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_2_20cm_2_scaffold_4583_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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1962..2309
DNA (348bp) protein (116aa)
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_2_20cm_2_scaffold_4583_4
unknown

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2312..3133
DNA (822bp) protein (274aa)

This feature has no annotations

13_2_20cm_2_scaffold_4583_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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3130..3366
DNA (237bp) protein (79aa)
Chromosome partition protein Smc n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AGE5_9CLOT
chromosome segregation protein; K03529 chromosome segregation protein Tax=GWC2_Gemmatimonadetes_71_10_curated
condensin subunit Smc
13_2_20cm_2_scaffold_4583_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3353..5137
DNA (1785bp) protein (595aa)
Chromosome partition protein Smc n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M6_GEMAT
chromosome segregation protein; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
chromosome segregation protein
13_2_20cm_2_scaffold_4583_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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5079..6353
DNA (1275bp) protein (425aa)
Chromosome partition protein Smc n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M6_GEMAT
chromosome segregation protein; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
chromosome segregation protein SMC
13_2_20cm_2_scaffold_4583_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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6354..7121
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_2_20cm_2_scaffold_4583_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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7124..8164
DNA (1041bp) protein (347aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M3_GEMAT
phospho-2-dehydro-3-deoxyheptonate aldolase
13_2_20cm_2_scaffold_4583_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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8161..8901
DNA (741bp) protein (247aa)
Outer-membrane lipoprotein carrier protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M2_GEMAT
lolA; outer-membrane lipoprotein carrier protein precursor; K03634 outer membrane lipoprotein carrier protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
outer membrane lipoprotein carrier protein LolA
13_2_20cm_2_scaffold_4583_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(8858..9142)
DNA (285bp) protein (95aa)
ptsN; PTS family fructose/mannitol (fru) porter component IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] id=24490873 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Flexithrix dorotheae genus=Flexithrix taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ptsN; PTS family fructose/mannitol (fru) porter component IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] Tax=RBG_16_RIF_WS3X_71_46_curated
DNA-binding protein/PTS system, IIA component
13_2_20cm_2_scaffold_4583_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(9139..9951)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PDV0_9CYAN id=5225296 bin=16ft_combo_ws3_JS1 species=Calothrix sp. PCC 7507 genus=Calothrix taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_2_20cm_2_scaffold_4583_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(10040..10933)
DNA (894bp) protein (298aa)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQA9_ROSCS
NADP oxidoreductase coenzyme F420-dependent Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
NADP oxidoreductase coenzyme F420-dependent
13_2_20cm_2_scaffold_4583_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(10934..11779)
DNA (846bp) protein (282aa)
ctpA; carboxyl-terminal processing protease precursor (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Carboxyl-terminal processing protease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M0_GEMAT
carboxyl-terminal protease
13_2_20cm_2_scaffold_4583_15
unknown

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11877..12572
DNA (696bp) protein (232aa)

This feature has no annotations

13_2_20cm_2_scaffold_4583_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(12425..12745)
DNA (321bp) protein (107aa)
tmk; dTMP kinase; K00943 dTMP kinase [EC:2.7.4.9] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tmk; thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=KTHY_THERP
13_2_20cm_2_scaffold_4583_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12935..13288)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7L8_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
protein of unknown function DUF964
13_2_20cm_2_scaffold_4583_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13285..13938)
DNA (654bp) protein (218aa)
putative methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7L7_GEMAT
protein-(glutamine-N5) methyltransferase, release factor-specific
13_2_20cm_2_scaffold_4583_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(14068..15126)
DNA (1059bp) protein (353aa)
Peptide chain release factor 1 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7L6_GEMAT
Peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium
13_2_20cm_2_scaffold_4583_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(15130..15342)
DNA (213bp) protein (71aa)
50S ribosomal protein L31 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RL31_THIDA
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rpmE; 50S ribosomal protein L31
13_2_20cm_2_scaffold_4583_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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15508..16179
DNA (672bp) protein (224aa)
Crp family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7L5_GEMAT
Crp family transcriptional regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
Crp family transcriptional regulator
13_2_20cm_2_scaffold_4583_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

16273..17151
DNA (879bp) protein (293aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Metallo-beta-lactamase family protein id=2777649 bin=GWC2_Chloroflexi_73_18 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
beta-lactamase superfamily metal-dependent hydrolase
13_2_20cm_2_scaffold_4583_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17169..17879
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEH8_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Curli production assembly/transport component CsgG
13_2_20cm_2_scaffold_4583_24
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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17918..19051
DNA (1134bp) protein (378aa)
metal dependent phosphohydrolase Tax=GWC2_Gemmatimonadetes_71_10_curated
Metal dependent phosphohydrolase id=4372559 bin=GWA2_Planctomycetia_40_7 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
metal dependent phosphohydrolase
Displaying 24 items

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