ggKbase home page

13_2_20cm_2_scaffold_489

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_489_1
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(1..144)
DNA (144bp) protein (48aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B38724
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEU35541.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC B
13_2_20cm_2_scaffold_489_2
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(480..977)
DNA (498bp) protein (166aa)
Mg chelatase-related protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILL6_KORVE
Mg chelatase-like protein
Mg chelatase-related protein {ECO:0000313|EMBL:ABF42234.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (
13_2_20cm_2_scaffold_489_3
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(974..1906)
DNA (933bp) protein (311aa)
Mg chelatase-related protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILL6_KORVE
Mg chelatase-like protein
Mg chelatase-related protein {ECO:0000313|EMBL:ABF42234.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (
13_2_20cm_2_scaffold_489_4
unknown

Not on your lists

2020..2184
DNA (165bp) protein (55aa)

This feature has no annotations

13_2_20cm_2_scaffold_489_5
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

2197..4338
DNA (2142bp) protein (714aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacte
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQS3_KORVE
signal transduction histidine kinase, nitrogen specific, NtrB
13_2_20cm_2_scaffold_489_6
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(4358..5551)
DNA (1194bp) protein (398aa)
Acetyl-CoA acetyltransferase family protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1FAB1_ACIC5
acetyl-CoA acetyltransferase family protein
Acetyl-CoA acetyltransferase family protein {ECO:0000313|EMBL:ACO34141.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium
13_2_20cm_2_scaffold_489_7
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(5951..8842)
DNA (2892bp) protein (964aa)
Uncharacterized protein n=2 Tax=Bacteria RepID=V5RT29_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_2_20cm_2_scaffold_489_8
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(8981..9691)
DNA (711bp) protein (237aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidoba
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILK8_KORVE
16S ribosomal RNA methyltransferase RsmE
13_2_20cm_2_scaffold_489_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9751..10833)
DNA (1083bp) protein (361aa)
Chaperone protein DnaJ n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILK7_KORVE
molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (st
13_2_20cm_2_scaffold_489_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(10913..11497)
DNA (585bp) protein (195aa)
Protein GrpE n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILK6_KORVE
heat shock protein GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acido
13_2_20cm_2_scaffold_489_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(11503..12543)
DNA (1041bp) protein (347aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILK5_KORVE rbh
heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candid
13_2_20cm_2_scaffold_489_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

12748..13881
DNA (1134bp) protein (378aa)
Sarcosine oxidase (EC:1.5.3.1) Tax=RBG_16_Gemmatimonadetes_66_8_curated
Sarcosine oxidase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EIP4_RUNSL
FAD dependent oxidoreductase
13_2_20cm_2_scaffold_489_13
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(13920..14759)
DNA (840bp) protein (280aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILK1_KORVE
cobyrinic acid a,c-diamide synthase
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:ABF42249.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versa
13_2_20cm_2_scaffold_489_14
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(14865..15347)
DNA (483bp) protein (161aa)
Thioesterase superfamily n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ6_KORVE
thioesterase
Thioesterase superfamily {ECO:0000313|EMBL:ABF42254.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (stra
13_2_20cm_2_scaffold_489_15

Not on your lists

15922..16215
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6Q007_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI00516.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
13_2_20cm_2_scaffold_489_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(16274..17080)
DNA (807bp) protein (269aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ4_KORVE
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABF42256.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter v
13_2_20cm_2_scaffold_489_17
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

17178..17786
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036ED620
ATP-dependent protease La domain-containing protein
ATP-dependent protease La domain protein {ECO:0000313|EMBL:ACO33512.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium cap
13_2_20cm_2_scaffold_489_18
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

17864..19351
DNA (1488bp) protein (496aa)
Magnesium protoporphyrin chelatase, putative n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ3_KORVE rbh
magnesium protoporphyrin chelatase
Magnesium protoporphyrin chelatase, putative {ECO:0000313|EMBL:ABF42257.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribac
13_2_20cm_2_scaffold_489_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

19444..20682
DNA (1239bp) protein (413aa)
von Willebrand factor, type A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ2_KORVE rbh
von Willebrand factor A
von Willebrand factor, type A {ECO:0000313|EMBL:ABF42258.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis
13_2_20cm_2_scaffold_489_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20709..21797)
DNA (1089bp) protein (363aa)
hypothetical protein; K00316 spermidine dehydrogenase [EC:1.5.99.6] Tax=RBG_16_Acidobacteria_70_10_curated
FAD dependent oxidoreductase n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BE59_MEISD
FAD dependent oxidoreductase
13_2_20cm_2_scaffold_489_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21794..22564)
DNA (771bp) protein (257aa)
hypothetical protein; K00316 spermidine dehydrogenase [EC:1.5.99.6] Tax=RBG_16_Acidobacteria_70_10_curated
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR65_KORVE
hypothetical protein
13_2_20cm_2_scaffold_489_22
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(22665..22904)
DNA (240bp) protein (80aa)
Zinc finger, CDGSH-type n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ1_KORVE
Zinc finger, CDGSH-type
Zinc finger, CDGSH-type {ECO:0000313|EMBL:ABF42259.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_2_20cm_2_scaffold_489_23
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(23059..24180)
DNA (1122bp) protein (374aa)
Glycosyl transferase, group 1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILI5_KORVE
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABF42265.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis
13_2_20cm_2_scaffold_489_24
unknown

Not on your lists

comp(24393..24623)
DNA (231bp) protein (77aa)

This feature has no annotations

13_2_20cm_2_scaffold_489_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(25192..25515)
DNA (324bp) protein (108aa)
periplasmic sensor hybrid histidine kinase; K10819 histidine kinase Tax=RBG_16_Nitrospirae_64_22_curated
PAS/PAC sensor hybrid histidine kinase id=4871543 bin=GWC2_Methylomirabilis_70_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
multi-sensor hybrid histidine kinase
Displaying 25 items

View Taxonomy