ggKbase home page

13_2_20cm_2_scaffold_5005

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_5005_1
unknown

Not on your lists

1..114
DNA (114bp) protein (38aa)

This feature has no annotations

13_2_20cm_2_scaffold_5005_2
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

111..1373
DNA (1263bp) protein (421aa)
Peptidase M23 n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SM00_THEM7
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ADU50330.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacte
13_2_20cm_2_scaffold_5005_3
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1387..2127)
DNA (741bp) protein (247aa)
Transcriptional repressor DcmR n=2 Tax=Rhizobiales RepID=DCMR_METED
dcmR; transcriptional repressor of DCM dehalogenase
Transcriptional repressor DcmR; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain D
13_2_20cm_2_scaffold_5005_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

2183..2842
DNA (660bp) protein (220aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQ04_PSEUX
Crp/Fnr family transcriptional regulator Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Crp/Fnr family transcriptional regulator
13_2_20cm_2_scaffold_5005_5
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

2911..4212
DNA (1302bp) protein (434aa)
putative PAS/PAC sensor protein Tax=GWB2_Chloroflexi_54_36_curated
Putative PAS/PAC sensor protein id=4494537 bin=GWC2_Chloroflexi_49_37 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
13_2_20cm_2_scaffold_5005_6
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4220..5473)
DNA (1254bp) protein (418aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Frankia sp. CN3 RepID=G6HQ10_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ETK36428.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024
multi-sensor signal transduction histidine kinase
13_2_20cm_2_scaffold_5005_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(5473..8238)
DNA (2766bp) protein (922aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EHP6_9CHLR
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_2_20cm_2_scaffold_5005_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(8235..8972)
DNA (738bp) protein (246aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=RBG_16_Actinobacteria_68_12_curated
Phosphonate-transporting ATPase n=1 Tax=Frankia sp. CN3 RepID=G6H2C7_9ACTO
ABC transporter
13_2_20cm_2_scaffold_5005_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(9150..9833)
DNA (684bp) protein (228aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Frankia sp. CN3 RepID=G6HBK8_9ACTO
response regulator receiver protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
putative NarL family two-component response regulator
13_2_20cm_2_scaffold_5005_10
unknown

Not on your lists

10000..10512
DNA (513bp) protein (171aa)

This feature has no annotations

13_2_20cm_2_scaffold_5005_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10640..11365)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Nocardiopsis ganjiahuensis RepID=UPI00034D8B62
fumarylacetoacetate (FAA) hydrolase family protein
Fumarylacetoacetate (FAA) hydrolase family protein {ECO:0000313|EMBL:AGA26565.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;"
13_2_20cm_2_scaffold_5005_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11377..12678)
DNA (1302bp) protein (434aa)
Mandelate racemase/muconate lactonizing enzyme-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARQ6_RUBXD
mandelate racemase/muconate lactonizing-like protein
Mandelate racemase/muconate lactonizing enzyme-like protein {ECO:0000313|EMBL:ABG05922.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacter
13_2_20cm_2_scaffold_5005_13
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(12681..13715)
DNA (1035bp) protein (345aa)
ABC transporter permease; K02026 multiple sugar transport system permease protein id=24401574 bin=RBG_19FT_COMBO_GAL15_69_19 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ABC transporter permease; K02026 multiple sugar transport system permease protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
ABC transporter permease
13_2_20cm_2_scaffold_5005_14
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(13721..14671)
DNA (951bp) protein (317aa)
ABC transporter system permease protein n=1 Tax=uncultured prokaryote RepID=H5SGC2_9ZZZZ
ABC transporter permease; K02025 multiple sugar transport system permease protein Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
ABC transporter permease
13_2_20cm_2_scaffold_5005_15

Not on your lists

comp(14841..15506)
DNA (666bp) protein (222aa)
ABC transporter system substrate-binding protein n=1 Tax=uncultured prokaryote RepID=H5SGC3_9ZZZZ
ABC transporter system substrate-binding protein {ECO:0000313|EMBL:BAL55209.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
putative ABC transporter solute-binding protein
13_2_20cm_2_scaffold_5005_16
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(15503..16222)
DNA (720bp) protein (240aa)
Putative ABC transporter solute-binding protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KXR3_THERP
putative ABC transporter solute-binding protein
Putative ABC transporter solute-binding protein {ECO:0000313|EMBL:ACM05353.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicr
13_2_20cm_2_scaffold_5005_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16368..17177)
DNA (810bp) protein (270aa)
maltose transporter permease MalG; K02026 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein id=24453332 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ABC transporter permease
13_2_20cm_2_scaffold_5005_18

Not on your lists

comp(17174..18007)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Microbacteriaceae RepID=UPI00036F1F8A
CUT1 family carbohydrate ABC transporter membrane protein 1
Binding-protein-dependent transport system inner membrane component {ECO:0000313|EMBL:AIA11035.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacteriu
13_2_20cm_2_scaffold_5005_19
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18751..19509
DNA (759bp) protein (253aa)
GntR family transcriptional regulator n=1 Tax=Streptomyces davawensis JCM 4913 RepID=K4RE75_9ACTO
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:CCK31299.1}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawens
13_2_20cm_2_scaffold_5005_20
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19746..20483
DNA (738bp) protein (246aa)
Aldo/keto reductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11HX1_MESSB
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABG63004.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (str
13_2_20cm_2_scaffold_5005_21
Streptomyces sp. MUSC164, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20483..21310
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003019A88
Amidohydrolase {ECO:0000313|EMBL:KKA36611.1}; TaxID=1354891 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MUSC164.;"
amidohydrolase
13_2_20cm_2_scaffold_5005_22
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

21481..21990
DNA (510bp) protein (170aa)
Carbonic anhydrase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATJ7_RUBXD
carbonic anhydrase
Carbonic anhydrase {ECO:0000313|EMBL:ABG05281.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter
13_2_20cm_2_scaffold_5005_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(21987..23252)
DNA (1266bp) protein (422aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] id=14628094 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=CSP1_6_Rokubacteria
glutamate-1-semialdehyde aminotransferase
13_2_20cm_2_scaffold_5005_24
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(23323..24354)
DNA (1032bp) protein (344aa)
Putative dehydrogenase n=1 Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=L0A1X8_DEIPD
dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AFZ67851.1}; TaxID=937777 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus peraridilitoris
13_2_20cm_2_scaffold_5005_25
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

24395..25432
DNA (1038bp) protein (346aa)
Oxidoreductase domain protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5US89_ROSS1
oxidoreductase domain-containing protein Tax=RBG_16_RIF_CHLX_72_14_curated
oxidoreductase domain-containing protein
13_2_20cm_2_scaffold_5005_26
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

25429..26337
DNA (909bp) protein (303aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5US90_ROSS1 rbh
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ABQ89493.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" sour
Displaying 26 items

View Taxonomy