ggKbase home page

13_2_20cm_2_scaffold_5672

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_5672_1
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

1..519
DNA (519bp) protein (173aa)
Radical SAM domain protein n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=D3T952_ACIB4
TIGR01210 family protein Tax=RBG_16_Euryarchaeota_68_13_curated
Radical SAM domain protein
13_2_20cm_2_scaffold_5672_2
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

559..879
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXD6_FERPA
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_2_20cm_2_scaffold_5672_3
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(1076..1384)
DNA (309bp) protein (103aa)
50S ribosomal protein L12 n=2 Tax=unclassified Thermoplasmatales RepID=M7T3Z7_9EURY
rpl12p; 50S ribosomal protein L12 Tax=RBG_16_Euryarchaeota_67_27_curated
rpl12p; 50S ribosomal protein L12
13_2_20cm_2_scaffold_5672_4
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(1390..2271)
DNA (882bp) protein (294aa)
50S ribosomal protein L10 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T7V4_9EURY
rplP0; acidic ribosomal protein P0 Tax=RBG_16_Euryarchaeota_67_27_curated
rplP0; acidic ribosomal protein P0
13_2_20cm_2_scaffold_5672_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(2281..2919)
DNA (639bp) protein (213aa)
50S ribosomal protein L1 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003677105
LSU ribosomal protein L10Ae (L1p) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
50S ribosomal protein L1
13_2_20cm_2_scaffold_5672_6
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

3171..3989
DNA (819bp) protein (273aa)
Transcriptional regulator, TrmB-like n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6NB21_9ARCH
transcriptional regulator TrmB Tax=RBG_16_Euryarchaeota_68_13_curated
transcriptional regulator, TrmB-like
13_2_20cm_2_scaffold_5672_7
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists


comp(4028..4450)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035C8BAF
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RBG_16_Euryarchaeota_68_13_curated
LSU ribosomal protein L11P
13_2_20cm_2_scaffold_5672_8
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

4499..5197
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B69C52
hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Methyltransferase domain
13_2_20cm_2_scaffold_5672_9
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(5256..6182)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003720D25
Putative transcription antitermination protein NusG Tax=RBG_16_Euryarchaeota_67_27_curated
Putative transcription antitermination protein NusG
13_2_20cm_2_scaffold_5672_10
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(6187..6438)
DNA (252bp) protein (84aa)
Protein translocase subunit SecE n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8P5_9EURY
secE; preprotein translocase subunit SecE Tax=RBG_16_Euryarchaeota_68_13_curated
secE; preprotein translocase subunit SecE
13_2_20cm_2_scaffold_5672_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(6444..7550)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003829ACA rbh
cell division protein FtsZ Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
cell division protein FtsZ
13_2_20cm_2_scaffold_5672_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(7683..8777)
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003778FC2 rbh
cell division protein FtsZ; K03531 cell division protein FtsZ Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
cell division protein FtsZ
13_2_20cm_2_scaffold_5672_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(8913..10205)
DNA (1293bp) protein (431aa)
HD superfamily phosphohydrolase n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HND9_ACIS0 rbh
metal dependent phosphohydrolase; K06885 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
HD superfamily phosphohydrolase
13_2_20cm_2_scaffold_5672_14
Kosmotoga olearia, Kosmotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(10145..12760)
DNA (2616bp) protein (872aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036D000B
extracellular solute-binding protein family 5
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ACR80240.1}; Flags: Precursor;; TaxID=521045 species="Bacteria; Thermotogae; Kosmotogales; Kosmotogaceae; Kosmotoga.;" source="Kosmotoga
13_2_20cm_2_scaffold_5672_trna_1
unknown

Not on your lists

13103..13175
DNA (73bp)
transferRNA
13_2_20cm_2_scaffold_5672_15
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

13262..14632
DNA (1371bp) protein (457aa)
cystathionine beta-synthase; K01697 cystathionine beta-synthase [EC:4.2.1.22] Tax=RBG_16_Euryarchaeota_67_27_curated
Cystathionine beta-synthase id=3805564 bin=GWC2_Ignavibacteria_56_12 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
cystathionine beta-synthase
13_2_20cm_2_scaffold_5672_16
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

14678..15802
DNA (1125bp) protein (375aa)
cystathionine gamma-lyase (EC:4.4.1.1) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
cystathionine gamma-lyase (EC:4.4.1.1)
Cystathionine gamma-lyase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I7V7_METCZ
13_2_20cm_2_scaffold_5672_17
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(15608..16534)
DNA (927bp) protein (309aa)
Tax=RBG_16_Euryarchaeota_68_13_curated
13_2_20cm_2_scaffold_5672_18
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

16677..18086
DNA (1410bp) protein (470aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RBG_16_Euryarchaeota_68_13_curated
Cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=6 Tax=Pelosinus fermentans RepID=I8SHQ7_9FIRM
Displaying 19 items

View Taxonomy