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13_2_20cm_2_scaffold_24459

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_24459_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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3..1031
DNA (1029bp) protein (343aa)
Ribosome-binding ATPase YchF n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MK23_RHOM4
ychF; GTP-binding protein YchF; K06942 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
GTP-binding protein YchF
13_2_20cm_2_scaffold_24459_2
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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1186..1536
DNA (351bp) protein (117aa)
30S ribosomal protein S6 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE7_9BACT
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000313|EMBL:CBK40556.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Ni
13_2_20cm_2_scaffold_24459_3
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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1520..1927
DNA (408bp) protein (136aa)
Single-stranded DNA-binding protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE8_9BACT
ssb; single-stranded DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrosp
13_2_20cm_2_scaffold_24459_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


1949..2173
DNA (225bp) protein (75aa)
30S ribosomal protein S18 n=1 Tax=Selenomonas sp. CM52 RepID=J5V0X2_9FIRM
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
30S ribosomal protein S18
13_2_20cm_2_scaffold_24459_5
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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2192..2713
DNA (522bp) protein (174aa)
Putative uncharacterized protein id=1874113 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein; K07040 uncharacterized protein Tax=GWB2_Nitrospirae_47_37_curated
hypothetical protein
13_2_20cm_2_scaffold_24459_6
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

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2751..2936
DNA (186bp) protein (62aa)
rpmF; ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 id=3567763 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
13_2_20cm_2_scaffold_24459_7
unknown

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comp(2914..3363)
DNA (450bp) protein (150aa)

This feature has no annotations

13_2_20cm_2_scaffold_24459_8
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

3491..3859
DNA (369bp) protein (123aa)
plsX; fatty acid/phospholipid synthesis protein; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
Phosphate acyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF2_9BACT
plsX; fatty acid/phospholipid synthesis protein
13_2_20cm_2_scaffold_24459_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3856..4833
DNA (978bp) protein (326aa)
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF3_9BACT
13_2_20cm_2_scaffold_24459_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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4845..5657
DNA (813bp) protein (271aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJH9_9BACT
short-chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CBE69564.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfe
13_2_20cm_2_scaffold_24459_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

5740..6549
DNA (810bp) protein (270aa)
fabD; malonyl-CoA-(acyl-carrier-protein) transacylase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
fabD; malonyl-CoA-(acyl-carrier-protein) transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF4_9BACT
13_2_20cm_2_scaffold_24459_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

6584..7327
DNA (744bp) protein (248aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:CBK40564.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBK40564.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitro
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF5_9BACT
13_2_20cm_2_scaffold_24459_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7392..7487
DNA (96bp) protein (32aa)
acpP; acyl carrier protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Displaying 13 items

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