ggKbase home page
Advanced Search
Search Help

13_2_20CM_2_Nitrospirae_61_4

In projects: 13_2_20CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Nitrospirae  →  Bacteria

Metagenomic Context

Parent: 13_2_20cm_2_UNK

Properties

Avg. coverage: 3.97 Longest contig: 8.95 Kbp Bin length: 3.25 Mbp GC content: 60.57 %
Contigs count: 1899 Features count: 4284 rRNAs count: 0 tRNAs count: 29

Genome completeness

partial RP 40 / 55 MC: 12 BSCG 33 / 51 MC: 8 ASCG 9 / 38 MC: 2

Description

partial genome.

Displaying items 51-100 of 1899 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_2_20cm_2_scaffold_241491
Species: Candidatus Nitrospira defluvii (75%)
4 1170 bp 64.44 3.97 100.51
13_2_20cm_2_scaffold_234075
Species: R_Betaproteobacteria_66_14 (100%)
2 1191 bp 71.54 5.42 100.50
13_2_20cm_2_scaffold_15161
Species: R_Nitrospirae_62_14 (66.67%)
6 5206 bp 65.27 11.50 100.50
13_2_20cm_2_scaffold_116308
Species: R_Nitrospirae_62_14 (50%)
2 1681 bp 62.34 4.19 100.48
13_2_20cm_2_scaffold_205166
Species: Candidatus Nitrospira defluvii (50%)
2 1275 bp 74.12 2.12 100.47
13_2_20cm_2_scaffold_110537
Species: R_Nitrospirae_62_14 (66.67%)
3 1723 bp 64.60 6.01 100.46
13_2_20cm_2_scaffold_185310
Species: Candidatus Nitrospira defluvii (50%)
2 1341 bp 55.63 2.35 100.45
13_2_20cm_2_scaffold_183750
Species: Candidatus Nitrospira defluvii (66.67%)
3 1347 bp 63.47 5.90 100.45
13_2_20cm_2_scaffold_56149
Species: Candidatus Nitrospira defluvii (60%)
5 3214 bp 62.63 5.97 100.44
13_2_20cm_2_scaffold_155409
Species: Candidatus Nitrospira defluvii (66.67%)
3 1464 bp 63.32 2.77 100.41
13_2_20cm_2_scaffold_109202
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)
2 1733 bp 57.82 4.33 100.40
13_2_20cm_2_scaffold_78356
Species: R_Nitrospirae_62_14 (66.67%)
3 2026 bp 64.66 3.70 100.40
13_2_20cm_2_scaffold_294292
Species: R_Nitrospirae_62_14 (50%)
2 1031 bp 59.55 3.49 100.39
13_2_20cm_2_scaffold_291530
Species: RBG_16_Deltaproteobacteria_54_11_curated (50%)
2 1037 bp 68.95 3.76 100.39
13_2_20cm_2_scaffold_195712
Species: R_Nitrospirae_62_14 (50%)
2 1306 bp 64.09 4.13 100.38
13_2_20cm_2_scaffold_280613
Phylum: Nitrospirae (100%)
3 1064 bp 57.14 4.79 100.38
13_2_20cm_2_scaffold_280645
Species: R_Nitrospirae_62_14 (50%)
2 1064 bp 61.56 2.54 100.38
13_2_20cm_2_scaffold_279629
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 1067 bp 58.95 2.81 100.37
13_2_20cm_2_scaffold_270405
Species: R_Nitrospirae_62_14 (50%)
2 1091 bp 60.49 3.71 100.37
13_2_20cm_2_scaffold_88608
Species: R_Nitrospirae_62_14 (75%)
4 1913 bp 64.45 10.12 100.37
13_2_20cm_2_scaffold_265721
Species: RBG_16_Anaeromyxobacter_69_14_curated (50%)
2 1103 bp 68.90 3.81 100.36
13_2_20cm_2_scaffold_249388
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)
2 1148 bp 60.28 1.83 100.35
13_2_20cm_2_scaffold_247359
Species: Candidatus Glomeribacter gigasporarum (50%)
2 1154 bp 58.49 3.51 100.35
13_2_20cm_2_scaffold_235289
Species: R_Nitrospirae_62_14 (50%)
2 1187 bp 71.02 3.54 100.34
13_2_20cm_2_scaffold_220479
Species: GWC2_Geobacteraceae_58_44_curated (50%)
2 1229 bp 71.11 4.52 100.33
13_2_20cm_2_scaffold_210437
Species: Candidatus Nitrospira defluvii (50%)
2 1259 bp 68.31 2.62 100.32
13_2_20cm_2_scaffold_47123
Species: Candidatus Nitrospira defluvii (100%)
3 2551 bp 57.35 3.06 100.31
13_2_20cm_2_scaffold_83243
Species: Candidatus Nitrospira defluvii (66.67%)
3 1971 bp 67.12 2.89 100.30
13_2_20cm_2_scaffold_190801
Species: R_Nitrospirae_62_14 (50%)
2 1322 bp 61.88 4.20 100.30
13_2_20cm_2_scaffold_186557
Species: Candidatus Nitrospira defluvii (50%)
2 1337 bp 58.34 1.80 100.30
13_2_20cm_2_scaffold_185575
Species: BJP_IG2069_Desfulfarculales_53_13 (50%)
2 1340 bp 72.39 5.37 100.30
13_2_20cm_2_scaffold_291248
Species: Candidatus Nitrospira defluvii (50%)
2 1038 bp 67.92 3.61 100.29
13_2_20cm_2_scaffold_285238
Species: Candidatus Nitrospira defluvii (100%)
2 1053 bp 60.97 1.42 100.29
13_2_20cm_2_scaffold_164966
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 1421 bp 65.45 4.54 100.28
13_2_20cm_2_scaffold_162214
Species: Candidatus Nitrospira defluvii (100%)
2 1433 bp 64.97 4.71 100.28
13_2_20cm_2_scaffold_264417
Species: R_Acidobacteria_67_21 (50%)
2 1110 bp 66.67 6.08 100.27
13_2_20cm_2_scaffold_259840
Species: R_Acidobacteria_67_28 (50%)
2 1119 bp 57.28 9.25 100.27
13_2_20cm_2_scaffold_255613
Species: Thermodesulfovibrio yellowstonii (50%)
2 1131 bp 56.23 4.24 100.27
13_2_20cm_2_scaffold_82070
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 1984 bp 62.05 3.78 100.25
13_2_20cm_2_scaffold_118833
Species: R_Nitrospirae_62_14 (100%)
2 1664 bp 64.12 3.34 100.24
13_2_20cm_2_scaffold_110854
Species: Candidatus Nitrospira defluvii (50%)
2 1721 bp 65.49 1.57 100.23
13_2_20cm_2_scaffold_22796
Species: Candidatus Nitrospira defluvii (100%)
2 3514 bp 59.93 6.32 100.23
13_2_20cm_2_scaffold_182814
Species: R_Nitrospirae_62_14 (100%)
2 1350 bp 61.19 3.22 100.22
13_2_20cm_2_scaffold_175707
Species: Candidatus Nitrospira defluvii (50%)
2 1377 bp 67.90 5.01 100.22
13_2_20cm_2_scaffold_95183
Species: R_Nitrospirae_62_14 (100%)
2 1850 bp 67.35 6.08 100.22
13_2_20cm_2_scaffold_158592
Species: GWC2_Nitrospirae_57_13_curated (50%)
2 1449 bp 59.42 5.28 100.21
13_2_20cm_2_scaffold_78321
Species: RLO_PLX_64_10 (50%)
2 2027 bp 68.38 5.40 100.20
13_2_20cm_2_scaffold_142898
Species: R_Nitrospirae_62_14 (100%)
3 1524 bp 64.63 3.74 100.20
13_2_20cm_2_scaffold_140001
Species: R_Nitrospirae_62_14 (100%)
3 1539 bp 65.17 2.63 100.20
13_2_20cm_2_scaffold_290691
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
2 1039 bp 73.44 10.54 100.19
Displaying items 51-100 of 1899 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.