ggKbase | organisms

Consensus taxonomy: Nitrospirae → Bacteria

Metagenomic Context

Parent: 13_2_20cm_2_UNK

Properties

Avg. coverage: 3.97 Longest contig: 8.95 Kbp Bin length: 3.25 Mbp GC content: 60.57 %

Contigs count: 1899 Features count: 4284 rRNAs count: 0 tRNAs count: 29

Genome completeness

partial RP 40 / 55 MC: 12 BSCG 33 / 51 MC: 8 ASCG 9 / 38 MC: 2

Description

partial genome.

Displaying items 101-150 of 1899 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_2_20cm_2_scaffold_289553 Species: RBG_16_Acidobacteria_68_9_curated (50%)	2	1042 bp	72.65	7.34	100.19
13_2_20cm_2_scaffold_289433 Species: Candidatus Nitrospira defluvii (50%)	2	1042 bp	63.24	2.88	100.19
13_2_20cm_2_scaffold_284666 Species: Granulicella tundricola (50%)	2	1054 bp	58.35	1.57	100.19
13_2_20cm_2_scaffold_283389 Species: R_Acidobacteria_67_28 (50%)	2	1057 bp	56.95	3.12	100.19
13_2_20cm_2_scaffold_277749 Species: RBG_16_RIF_WS3X_71_46_curated (50%)	2	1072 bp	69.22	32.04	100.19
13_2_20cm_2_scaffold_277797 Species: Candidatus Nitrospira defluvii (50%)	2	1072 bp	63.34	3.78	100.19
13_2_20cm_2_scaffold_271807 Species: R_Nitrospirae_62_14 (50%)	2	1087 bp	57.96	1.93	100.18
13_2_20cm_2_scaffold_271620 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	1087 bp	57.22	3.59	100.18
13_2_20cm_2_scaffold_256497 Species: R_Nitrospirae_62_14 (100%)	2	1129 bp	62.36	2.39	100.18
13_2_20cm_2_scaffold_256290 Species: RLO_PLX_64_10 (50%)	2	1129 bp	56.78	4.25	100.18
13_2_20cm_2_scaffold_112669 Species: RLO_Nitrospinae_45_22 (50%)	2	1707 bp	73.87	6.06	100.18
13_2_20cm_2_scaffold_247532 Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)	2	1153 bp	58.98	1.82	100.17
13_2_20cm_2_scaffold_246516 Species: RBG_16_KB1_OP1_55_9_curated (50%)	2	1156 bp	66.35	4.28	100.17
13_2_20cm_2_scaffold_35345 Phylum: Nitrospirae (66.67%)	3	2902 bp	64.54	3.82	100.17
13_2_20cm_2_scaffold_306747 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)	2	1758 bp	57.17	4.01	100.17
13_2_20cm_2_scaffold_229298 Species: Candidatus Magnetobacterium bavaricum (50%)	2	1204 bp	57.97	3.61	100.17
13_2_20cm_2_scaffold_225069 Species: R_Nitrospirae_62_14 (50%)	2	1216 bp	64.31	4.81	100.16
13_2_20cm_2_scaffold_91846 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)	2	1881 bp	68.21	2.79	100.16
13_2_20cm_2_scaffold_201201 Species: R_Nitrospirae_62_14 (50%)	2	1288 bp	60.17	2.91	100.16
13_2_20cm_2_scaffold_192069 Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (100%)	2	1318 bp	59.48	3.07	100.15
13_2_20cm_2_scaffold_189302 Species: Pyrinomonas methylaliphatogenes (100%)	2	1327 bp	54.56	2.03	100.15
13_2_20cm_2_scaffold_184230 Species: Candidatus Nitrospira defluvii (50%)	2	1345 bp	65.65	2.23	100.15
13_2_20cm_2_scaffold_181702 Species: Candidatus Nitrospira defluvii (100%)	2	1354 bp	60.34	5.21	100.15
13_2_20cm_2_scaffold_178629 Species: Candidatus Nitrospira defluvii (50%)	2	1366 bp	64.93	5.38	100.15
13_2_20cm_2_scaffold_176085 Species: Candidatus Nitrospira defluvii (50%)	2	1375 bp	62.84	6.33	100.15
13_2_20cm_2_scaffold_34491 Species: GWC2_Nitrospirae_56_14_curated (50%)	2	2933 bp	69.14	3.89	100.14
13_2_20cm_2_scaffold_153362 Species: R_Nitrospirae_62_14 (50%)	2	1474 bp	60.58	2.85	100.14
13_2_20cm_2_scaffold_59839 Species: Pyrinomonas methylaliphatogenes (50%)	2	2292 bp	57.20	4.71	100.13
13_2_20cm_2_scaffold_136930 Species: GWC2_Nitrospirae_56_14_curated (50%)	2	1555 bp	65.02	4.05	100.13
13_2_20cm_2_scaffold_129675 Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (100%)	2	1597 bp	58.23	2.35	100.13
13_2_20cm_2_scaffold_115860 Species: R_Nitrospirae_62_14 (50%)	2	1684 bp	66.03	2.76	100.12
13_2_20cm_2_scaffold_108578 Species: R_Nitrospirae_62_14 (100%)	2	1738 bp	59.84	3.54	100.12
13_2_20cm_2_scaffold_6696 Phylum: Proteobacteria (66.67%)	3	5886 bp	70.08	3.70	100.10
13_2_20cm_2_scaffold_300668 Species: RLO_RIF_CHLX_71_12 (100%)	2	1016 bp	70.37	4.28	100.10
13_2_20cm_2_scaffold_277166 Species: Candidatus Nitrospira defluvii (100%)	2	1073 bp	62.26	3.77	100.09
13_2_20cm_2_scaffold_275966 Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)	2	1076 bp	65.24	3.90	100.09
13_2_20cm_2_scaffold_275983 Species: R_Nitrospirae_62_14 (50%)	2	1076 bp	67.38	5.16	100.09
13_2_20cm_2_scaffold_253707 Species: Thermoanaerobaculum aquaticum (50%)	2	1136 bp	69.54	5.81	100.09
13_2_20cm_2_scaffold_248496 Species: Candidatus Nitrospira defluvii (50%)	2	1151 bp	62.64	4.69	100.09
13_2_20cm_2_scaffold_56064 Species: Candidatus Nitrospira defluvii (100%)	2	2359 bp	62.23	4.64	100.09
13_2_20cm_2_scaffold_54263 Species: Candidatus Nitrospira defluvii (50%)	2	2395 bp	58.62	3.13	100.08
13_2_20cm_2_scaffold_230058 Species: BJP_IG2069_Desfulfarculales_53_13 (50%)	2	1202 bp	64.64	2.62	100.08
13_2_20cm_2_scaffold_49058 Species: Candidatus Nitrospira defluvii (50%)	2	2506 bp	68.83	5.21	100.08
13_2_20cm_2_scaffold_211551 Species: R_Nitrospirae_62_14 (100%)	2	1256 bp	66.72	5.85	100.08
13_2_20cm_2_scaffold_193661 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)	2	1313 bp	70.68	2.51	100.08
13_2_20cm_2_scaffold_188179 Species: Candidatus Nitrospira defluvii (100%)	2	1331 bp	55.82	2.48	100.08
13_2_20cm_2_scaffold_176849 Species: Candidatus Nitrospira defluvii (50%)	2	1373 bp	63.51	3.17	100.07
13_2_20cm_2_scaffold_164954 Species: Candidatus Nitrospira defluvii (50%)	2	1421 bp	60.52	3.48	100.07
13_2_20cm_2_scaffold_133653 Phylum: Nitrospirae (66.67%)	3	1574 bp	57.05	4.29	100.06
13_2_20cm_2_scaffold_130506 Species: RLO_RIF_CHLX_71_12 (100%)	2	1592 bp	67.34	2.83	100.06

Displaying items 101-150 of 1899 in total

13_2_20CM_2_Nitrospirae_61_4

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_2_20CM_2_Nitrospirae_61_4

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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