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13_2_20cm_2_scaffold_164

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_164_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1005
DNA (1005bp) protein (335aa)
fixN; cytochrome-c oxidase fixN chain (EC:1.9.3.1)
Cytochrome-c oxidase FixN chain {ECO:0000313|EMBL:CCE99720.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CCE99720.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiacea
Cytochrome-c oxidase fixN chain n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AF88_RHIFH
13_2_20cm_2_scaffold_164_2
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1022..2677
DNA (1656bp) protein (552aa)
Peptidase S41 n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QRF5_RALPI
peptidase S41
Peptidase S41 {ECO:0000313|EMBL:AGW90662.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
13_2_20cm_2_scaffold_164_3
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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2691..2993
DNA (303bp) protein (101aa)
Tax=BJP_IG2102_Gammaproteobacteria_62_140
13_2_20cm_2_scaffold_164_4
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2990..3184
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QHY2_RALPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EYS86807.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-
13_2_20cm_2_scaffold_164_5
unknown

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3189..3293
DNA (105bp) protein (35aa)

This feature has no annotations

13_2_20cm_2_scaffold_164_6
R_NC10_66_22, NC10, Bacteria

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3495..4193
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI0003638EF1
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein
13_2_20cm_2_scaffold_164_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4285..5004
DNA (720bp) protein (240aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4343485 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heme exporter protein CcmA
13_2_20cm_2_scaffold_164_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5001..5678
DNA (678bp) protein (226aa)
Cytochrome c-type biogenesis protein CcmB id=4343483 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Heme exporter, protein B Tax=GWA2_Rokubacteria_73_35_curated
Heme exporter, protein B
13_2_20cm_2_scaffold_164_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5675..6331
DNA (657bp) protein (219aa)
Heme ABC transporter (Heme exporter protein C), permease protein (Cytochrome c biogenesis) id=4343481 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis) Tax=GWA2_Rokubacteria_73_35_curated
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis)
13_2_20cm_2_scaffold_164_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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6331..6501
DNA (171bp) protein (57aa)
Tax=CSP1_6_Rokubacteria
13_2_20cm_2_scaffold_164_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6512..6946
DNA (435bp) protein (145aa)
ccmE; cytochrome c-type biogenesis protein CcmE Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ccmE; cytochrome c-type biogenesis protein CcmE id=14625136 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ccmE; cytochrome c-type biogenesis protein CcmE
13_2_20cm_2_scaffold_164_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6943..8886
DNA (1944bp) protein (648aa)
cycK; cytochrome c-type biogenesis protein cycK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cycK; cytochrome c-type biogenesis protein cycK id=14625137 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
cycK; cytochrome c-type biogenesis protein cycK
13_2_20cm_2_scaffold_164_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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8883..9419
DNA (537bp) protein (179aa)
ccmG; periplasmic thioredoxin (cytochrome c biogenesis) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Periplasmic thioredoxin (Cytochrome c biogenesis) id=4062402 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccmG; periplasmic thioredoxin (cytochrome c biogenesis)
13_2_20cm_2_scaffold_164_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9416..9886
DNA (471bp) protein (157aa)
cycL; cytochrome c-type biogenesis protein cycL Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c-type biogenesis protein cycL id=4062401 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cycL; cytochrome c-type biogenesis protein cycL
13_2_20cm_2_scaffold_164_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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9883..10791
DNA (909bp) protein (303aa)
cytochrome c family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c family protein id=4062400 bin=GWF2_Methylomirabilis_70_14 species=Thermus scotoductus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_164_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10944..11297)
DNA (354bp) protein (118aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_2_20cm_2_scaffold_164_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(11294..11986)
DNA (693bp) protein (231aa)
DtxR family iron dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator id=14625222 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
iron dependent repressor
13_2_20cm_2_scaffold_164_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12068..14080
DNA (2013bp) protein (671aa)
ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) (EC:6.5.1.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) (EC:6.5.1.2)
DNA ligase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHF2_9BACT rbh
13_2_20cm_2_scaffold_164_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14077..15078
DNA (1002bp) protein (334aa)
Kelch repeat type 1-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Kelch repeat-containing protein id=3960133 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Kelch repeat-containing protein
13_2_20cm_2_scaffold_164_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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15075..15728
DNA (654bp) protein (218aa)
Tetratricopeptide TPR_2 id=3960130 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_2_scaffold_164_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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15728..16411
DNA (684bp) protein (228aa)
putative transferase protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Probable transferase protein id=4424806 bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative transferase protein
13_2_20cm_2_scaffold_164_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16425..17294
DNA (870bp) protein (290aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alpha/beta hydrolase fold protein id=3960128 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein
13_2_20cm_2_scaffold_164_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17291..17725
DNA (435bp) protein (145aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
GCN5-related N-acetyltransferase id=3960125 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_164_24

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comp(17820..18389)
DNA (570bp) protein (190aa)
Two component, sigma54 specific, transcriptional regulator, Fis family (Fragment) n=1 Tax=mine drainage metagenome RepID=T1D691_9ZZZZ
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EQD76979.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenome
two component sigma-54 specific Fis family transcriptional regulator
13_2_20cm_2_scaffold_164_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18386..18814)
DNA (429bp) protein (143aa)
two-component system sensor protein (EC:2.7.3.-) Tax=GWA2_Rokubacteria_73_35_curated
response regulator receiver modulated CheB methylesterase (EC:3.1.1.61)
cetoacetate metabolism regulatory protein atoC id=2772883 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_164_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(19192..19464)
DNA (273bp) protein (91aa)
Transposase, putative id=3960120 bin=GWA2_Methylomirabilis_73_35 species=Acaryochloris marina genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transposase, putative Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_2_scaffold_164_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19644..20012)
DNA (369bp) protein (123aa)
response regulator receiver and ANTAR domain-containing protein; K07183 response regulator NasT Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
response regulator receiver protein id=14626491 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
yfhA; putative two component transcriptional regulator
13_2_20cm_2_scaffold_164_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20009..21589)
DNA (1581bp) protein (527aa)
alpha-isopropylmalate/homocitrate synthase family transferase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
2-isopropylmalate synthase/homocitrate synthase family protein id=3960116 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative alpha-isopropylmalate/homocitrate synthase family transferase
13_2_20cm_2_scaffold_164_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(21627..21782)
DNA (156bp) protein (52aa)
acetyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_2_20cm_2_scaffold_164_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21782..22978)
DNA (1197bp) protein (399aa)
CaiB/BaiF family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-carnitine dehydratase/bile acid-inducible protein F id=3960114 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
CaiB/BaiF family protein
Displaying items 1-30 of 31 in total

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