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13_2_20cm_2_scaffold_332

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_332_1

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2..862
DNA (861bp) protein (287aa)
Integrase core domain protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LT47_SYNAS
Marine sediment metagenome DNA, contig: S06H3_L02367 {ECO:0000313|EMBL:GAI16426.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
integrase core subunit
13_2_20cm_2_scaffold_332_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(931..1908)
DNA (978bp) protein (326aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC:1.1.1.26)
lactate dehydrogenase-like oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
D-3-phosphoglycerate dehydrogenase id=2654089 bin=GWC2_Methylomirabilis_70_24 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_2_scaffold_332_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1913..2923)
DNA (1011bp) protein (337aa)
aldo/keto reductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aldo/keto reductase id=4911286 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative aldoketoreductase
13_2_20cm_2_scaffold_332_4
unknown

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comp(3216..4229)
DNA (1014bp) protein (338aa)

This feature has no annotations

13_2_20cm_2_scaffold_332_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(4716..7658)
DNA (2943bp) protein (981aa)
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3)
GAF sensor hybrid histidine kinase id=4493679 bin=GWC2_Methylomirabilis_70_16 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GAF sensor hybrid histidine kinase Tax=GWC2_Rokubacteria_70_16_curated
13_2_20cm_2_scaffold_332_6
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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7886..8251
DNA (366bp) protein (122aa)
Putative sugar ABC transporter, permease protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N9Y9_RHOPA
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
sugar ABC transporter permease
13_2_20cm_2_scaffold_332_7
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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8261..9334
DNA (1074bp) protein (358aa)
Putative sugar ABC transporter (ATP-binding protein), with TOBE domain (C-terminal) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AW26_AZOBR
sugar ABC transporter ATP-binding protein; K10112 maltose/maltodextrin transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
putative sugar ABC transporter (ATP-binding protein), with TOBE domain (C-terminal)
13_2_20cm_2_scaffold_332_8
unknown

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9457..9651
DNA (195bp) protein (65aa)

This feature has no annotations

13_2_20cm_2_scaffold_332_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(9671..10597)
DNA (927bp) protein (309aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase id=3352297 bin=GWA2_Methylomirabilis_73_35 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_332_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(10594..10926)
DNA (333bp) protein (111aa)
carboxymuconolactone decarboxylase (EC:1.11.1.15) Tax=GWA2_Rokubacteria_73_35_curated
Carboxymuconolactone decarboxylase id=3352295 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alcohol dehydrogenase
13_2_20cm_2_scaffold_332_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10945..12423)
DNA (1479bp) protein (493aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Variovorax sp. CF313 RepID=J3CPP8_9BURK
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EJL75766.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
beta-lactamase domain-containing protein
13_2_20cm_2_scaffold_332_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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12573..13328
DNA (756bp) protein (252aa)
beta-lactamase class B id=14627174 bin=bin7_NC10_sister species=Amycolatopsis balhimycina genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
beta-lactamase class B Tax=CSP1_6_Rokubacteria
putative Zn-dependent hydrolase
13_2_20cm_2_scaffold_332_13
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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13465..14421
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035D0251
cyclase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
cyclase
13_2_20cm_2_scaffold_332_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(14466..15443)
DNA (978bp) protein (326aa)
bug43; hypothetical protein id=14627783 bin=bin7_NC10_sister species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
bug43; hypothetical protein Tax=CSP1_6_Rokubacteria
protein bugT
13_2_20cm_2_scaffold_332_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(15472..16089)
DNA (618bp) protein (206aa)
Putative uncharacterized protein id=4695034 bin=GWC2_Methylomirabilis_70_16 species=uncultured marine microorganism HF4000_APKG5H11 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_2_20cm_2_scaffold_332_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16116..16880)
DNA (765bp) protein (255aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4W3U4_9CYAN
short-chain dehydrogenase/reductase SDR Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
short chain dehydrogenase family protein
13_2_20cm_2_scaffold_332_17
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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17055..17831
DNA (777bp) protein (259aa)
Extracellular solute-binding protein family 1 n=1 Tax=Acetonema longum DSM 6540 RepID=F7NFD9_9FIRM
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:EGO65264.1}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonem
molybdate ABC transporter periplasmic protein
13_2_20cm_2_scaffold_332_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17836..19545
DNA (1710bp) protein (570aa)
dipeptidyl aminopeptidase; K06978 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hydrolase CocE/NonD family protein id=4827668 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase S15
13_2_20cm_2_scaffold_332_19
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(19615..20061)
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Moorea producens 3L RepID=F4XQB4_9CYAN
Putative uncharacterized protein {ECO:0000313|EMBL:EGJ33216.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
hypothetical protein
13_2_20cm_2_scaffold_332_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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20216..21532
DNA (1317bp) protein (439aa)
aminotransferase class-III; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=GWA2_Rokubacteria_73_35_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=3222459 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aminotransferase class-III
13_2_20cm_2_scaffold_332_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(21597..22199)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBU6_9BACT
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_2_scaffold_332_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22364..25027)
DNA (2664bp) protein (888aa)
putative transmembrane signal transduction receptor and sigma-54 dependent response regulator Tax=GWA2_Rokubacteria_73_35_curated
Putative transmembrane signal transduction receptor and sigma-54 dependent response regulator id=4221518 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative transmembrane signal transduction receptor and sigma-54 dependent response regulator
13_2_20cm_2_scaffold_332_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(25051..26091)
DNA (1041bp) protein (347aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TPR repeat id=4221516 bin=GWA2_Methylomirabilis_73_35 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_332_24
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(26249..27418)
DNA (1170bp) protein (390aa)
Histidine kinase (EC:2.7.13.3)
Putative Histidine kinase {ECO:0000313|EMBL:CBE69170.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CBE69170.1};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Can
Putative Histidine kinase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHD8_9BACT
13_2_20cm_2_scaffold_332_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(27470..28069)
DNA (600bp) protein (200aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4221598 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_332_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(28148..28921)
DNA (774bp) protein (258aa)
Putative uncharacterized protein id=3327080 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_2_20cm_2_scaffold_332_27
R_NC10_66_22, NC10, Bacteria

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comp(28947..29372)
DNA (426bp) protein (142aa)
Hypothetical conserved protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRP8_9BACT
DoxX family protein; K15977 putative oxidoreductase Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
DoxX family protein
13_2_20cm_2_scaffold_332_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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29627..30256
DNA (630bp) protein (210aa)
Rieske iron-sulfur protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G3E8_9BRAD
rieske iron-sulfur protein
Rieske iron-sulfur protein {ECO:0000313|EMBL:BAL08754.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium
13_2_20cm_2_scaffold_332_29
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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30325..30795
DNA (471bp) protein (157aa)
Putative alcohol dehydrogenase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5A7_9RHOO
Alcohol dehydrogenase PQQ-dependent, large subunit {ECO:0000313|EMBL:GAN76593.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera
putative alcohol dehydrogenase precursor
Displaying 29 items

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