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13_2_20cm_2_scaffold_978

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_978_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..138)
DNA (138bp) protein (46aa)
exodeoxyribonuclease III; K01142 exodeoxyribonuclease III [EC:3.1.11.2] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
exodeoxyribonuclease III n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00036DC33D
exodeoxyribonuclease III
13_2_20cm_2_scaffold_978_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

197..1402
DNA (1206bp) protein (402aa)
transmembrane protein id=14626568 bin=bin7_NC10_sister species=Rhizobium leguminosarum genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
transmembrane protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_2_scaffold_978_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1403..1819
DNA (417bp) protein (139aa)
hypothetical protein id=14626569 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_2_20cm_2_scaffold_978_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1841..3208)
DNA (1368bp) protein (456aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_
sigma-54-dependent transcriptional response regulator
13_2_20cm_2_scaffold_978_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3212..5440)
DNA (2229bp) protein (743aa)
nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] id=14625170 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sensor histidine kinase, HAMP and PAS domain-containing
13_2_20cm_2_scaffold_978_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5440..6006)
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=2287876 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_2_20cm_2_scaffold_978_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6053..6940)
DNA (888bp) protein (296aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=2287875 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium HF0770_27F21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_978_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7103..7525)
DNA (423bp) protein (141aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625167 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_2_scaffold_978_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7560..8333)
DNA (774bp) protein (258aa)
hypothetical protein; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal RNA small subunit methyltransferase E id=2287874 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA methyltransferase, RsmE family
13_2_20cm_2_scaffold_978_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8308..9204)
DNA (897bp) protein (299aa)
prmA; 50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Ribosomal protein L11 methyltransferase id=2287873 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L11 methyltransferase
13_2_20cm_2_scaffold_978_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9209..10306)
DNA (1098bp) protein (366aa)
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Chaperone protein DnaJ id=2287872 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
13_2_20cm_2_scaffold_978_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10311..10823)
DNA (513bp) protein (171aa)
grpE; heat shock protein nucleotide exchange factor GrpE; K03687 molecular chaperone GrpE Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Protein GrpE id=2287871 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heat shock protein GrpE
13_2_20cm_2_scaffold_978_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10961..11986)
DNA (1026bp) protein (342aa)
heat-inducible transcriptional repressor; K03705 heat-inducible transcriptional repressor Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat-inducible transcription repressor HrcA id=2287870 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hrcA; Heat-inducible transcription repressor
13_2_20cm_2_scaffold_978_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11996..13027)
DNA (1032bp) protein (344aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Oxygen-independent coproporphyrinogen III oxidase id=2287869 bin=GWA2_Methylomirabilis_73_35 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_978_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13192..15576)
DNA (2385bp) protein (795aa)
GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Elongation factor 4 id=4648602 bin=GWF2_Methylomirabilis_70_14 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GTP-binding protein LepA
13_2_20cm_2_scaffold_978_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15629..16714)
DNA (1086bp) protein (362aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nucleotidyl transferase id=3102370 bin=GWC2_Methylomirabilis_70_16 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nucleotidyl transferase
13_2_20cm_2_scaffold_978_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16714..16884)
DNA (171bp) protein (57aa)
hypothetical protein; K09791 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=2287863 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_978_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16881..17828)
DNA (948bp) protein (316aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=GWA2_Rokubacteria_73_35_curated
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
NAD-dependent epimerase/dehydratase id=2287861 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_978_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(17825..18760)
DNA (936bp) protein (312aa)
NAD-dependent epimerase/dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UDP-glucuronate decarboxylase (EC:4.1.1.35)
NAD-dependent epimerase/dehydratase id=2287859 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_978_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18769..19185)
DNA (417bp) protein (139aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase id=2287856 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_978_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19182..19955)
DNA (774bp) protein (258aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nucleotide sugar dehydrogenase (EC:1.1.1.22) id=14625154 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
nucleotide sugar dehydrogenase (EC:1.1.1.22)
13_2_20cm_2_scaffold_978_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19966..20760)
DNA (795bp) protein (265aa)
ctaG; putative CtaG protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative CtaG protein id=4464468 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
13_2_20cm_2_scaffold_978_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20846..21154)
DNA (309bp) protein (103aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=4464469 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome C oxidase subunit IV
13_2_20cm_2_scaffold_978_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(21167..21811)
DNA (645bp) protein (215aa)
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cytochrome c oxidase, subunit I id=4464470 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c oxidase subunit III
13_2_20cm_2_scaffold_978_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

22369..22569
DNA (201bp) protein (67aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_2_20cm_2_scaffold_978_26
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

22828..23052
DNA (225bp) protein (75aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_2_20cm_2_scaffold_978_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23423..24340)
DNA (918bp) protein (306aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
cytochrome c oxidase subunit II (EC:1.9.3.1)
Cytochrome c oxidase subunit 2 id=4464471 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_978_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24476..25738)
DNA (1263bp) protein (421aa)
hydantoinase/carbamoylase amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amidase, hydantoinase/carbamoylase family (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family id=4464472 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_978_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

25806..26996
DNA (1191bp) protein (397aa)
acyl-CoA dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Acyl-CoA dehydrogenase domain protein id=4464473 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
13_2_20cm_2_scaffold_978_30
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

27005..28144
DNA (1140bp) protein (380aa)
putative acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative acyl-CoA dehydrogenase (EC:1.3.99.-)
Butyryl-CoA dehydrogenase id=4464474 bin=GWA2_Methylomirabilis_73_35 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Displaying items 1-30 of 31 in total

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