ggKbase home page

13_2_20cm_2_scaffold_4360

Search features with annotation key words

Displaying 15 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_4360_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(3..1265)
DNA (1263bp) protein (421aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8A3_9BACT
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:EDY17296.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
acyl-CoA dehydrogenase domain-containing protein
13_2_20cm_2_scaffold_4360_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(1415..2221)
DNA (807bp) protein (269aa)
fadJ; multifunctional fatty acid oxidation complex subunit alpha (EC:1.1.1.35 4.2.1.17 5.1.2.3)
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8A4_9BACT
3-hydroxyacyl-CoA dehydrogenase NAD-binding {ECO:0000313|EMBL:EDY17297.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_2_20cm_2_scaffold_4360_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

3300..4853
DNA (1554bp) protein (518aa)
Magnesium transporter n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYL5_9BACT
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
mgtE; Mg/Co/Ni transporter MgtE
13_2_20cm_2_scaffold_4360_4
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

4897..5451
DNA (555bp) protein (185aa)
Phosphate transport regulator related to PhoU n=2 Tax=unclassified Opitutaceae RepID=I6AXI6_9BACT
phosphate transport regulator
Phosphate transport regulator {ECO:0000313|EMBL:AHF89774.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
13_2_20cm_2_scaffold_4360_5
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

5471..6511
DNA (1041bp) protein (347aa)
Phosphate transporter n=2 Tax=unclassified Opitutaceae RepID=H1J0P5_9BACT
inorganic phosphate transporter
Phosphate/sulfate permease {ECO:0000313|EMBL:EIP99726.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
13_2_20cm_2_scaffold_4360_6
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(6726..7733)
DNA (1008bp) protein (336aa)
Putative aminopeptidase n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WD45_9CYAN rbh
aminopeptidase
Putative aminopeptidase {ECO:0000313|EMBL:AFZ17664.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
13_2_20cm_2_scaffold_4360_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7810..8934)
DNA (1125bp) protein (375aa)
ABC-2 type transporter n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI46_9BACT
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source=
ABC transporter, ATP-binding subunit, PltJ-like
13_2_20cm_2_scaffold_4360_8

Not on your lists

comp(9012..9266)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DZ92_9BACT id=719622 bin=RAAC39 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RAAC39 organism_group=Ignavibacteria
Marine sediment metagenome DNA, contig: S01H4_C01293 {ECO:0000313|EMBL:GAG66171.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
excinuclease ABC subunit C
13_2_20cm_2_scaffold_4360_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(9309..10256)
DNA (948bp) protein (316aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI47_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF60540.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" sour
ABC transporter, ATP binding protein
13_2_20cm_2_scaffold_4360_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10386..11315)
DNA (930bp) protein (310aa)
Secretion protein HlyD family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI48_9BACT
Secretion protein HlyD family protein {ECO:0000313|EMBL:EEF60541.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;
RND family efflux pump membrane fusion protein
13_2_20cm_2_scaffold_4360_11
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11330..11962)
DNA (633bp) protein (211aa)
Transcriptional regulator n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CA51_DESTA
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFM26442.1}; Flags: Precursor;; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" so
13_2_20cm_2_scaffold_4360_12
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

12107..12520
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SAR7_HAHCH
hypothetical protein Tax=GWA2_Ignavibacteria_54_16_curated
hypothetical protein
13_2_20cm_2_scaffold_4360_13
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12517..12945
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZK88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCQ95027.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
glyoxalase
13_2_20cm_2_scaffold_4360_14
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(12942..14282)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R1J6_ISOPI
Uncharacterized protein {ECO:0000313|EMBL:GAN32785.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="
hypothetical protein
13_2_20cm_2_scaffold_4360_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14397..14582)
DNA (186bp) protein (62aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=497964
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3C4_9BACT
Displaying 15 items

View Taxonomy