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13_2_20cm_2_scaffold_1381

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Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_1381_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..665)
DNA (663bp) protein (221aa)
Amidase id=4900376 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidase Tax=GWA2_Rokubacteria_73_35_curated
Asp-tRNA Asn/Glu-tRNA Gln amidotransferase subunit A
13_2_20cm_2_scaffold_1381_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(951..2945)
DNA (1995bp) protein (665aa)
TRAP C4-dicarboxylate transport system permease DctM Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative TRAP-type C4-dicarboxylate transport system, large permease component id=4900377 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TRAP dicarboxylate transporter subunit DctM
13_2_20cm_2_scaffold_1381_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2942..3610)
DNA (669bp) protein (223aa)
Putative membrane protein id=4900378 bin=GWA2_Methylomirabilis_73_35 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative transporter dctQ related transmembrane protein Tax=GWA2_Rokubacteria_73_35_curated
transporter dctQ related transmembrane protein
13_2_20cm_2_scaffold_1381_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3682..4866)
DNA (1185bp) protein (395aa)
Putative uncharacterized protein id=4900379 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
C4-dicarboxylate ABC transporter
13_2_20cm_2_scaffold_1381_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4993..5670)
DNA (678bp) protein (226aa)
protease Do (EC:3.4.21.108) id=14625822 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
htrA; periplasmic serine protease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
protease Do
13_2_20cm_2_scaffold_1381_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5670..6308)
DNA (639bp) protein (213aa)
lon3; ATP-dependent protease La; K07157 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lon3; ATP-dependent protease La; K07157 id=14625820 bin=bin7_NC10_sister species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
lon3; ATP-dependent protease La
13_2_20cm_2_scaffold_1381_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6317..7591)
DNA (1275bp) protein (425aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Mrp id=4334328 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_1381_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7691..8173
DNA (483bp) protein (161aa)
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
flavin reductase domain-containing protein id=14625818 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
flavin reductase domain protein FMN-binding protein
13_2_20cm_2_scaffold_1381_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8170..9249
DNA (1080bp) protein (360aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
lpsC; perosamine synthetase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DegT/DnrJ/EryC1/StrS aminotransferase id=4600877 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_1381_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9269..10369
DNA (1101bp) protein (367aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
group 1 glycosyl transferase id=14625816 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
group 1 glycosyl transferase
13_2_20cm_2_scaffold_1381_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10366..12114
DNA (1749bp) protein (583aa)
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lipid A export ATP-binding/permease protein MsbA id=4600885 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phospholipid-lipopolysaccharide ABC transporter
13_2_20cm_2_scaffold_1381_12
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12164..12715)
DNA (552bp) protein (184aa)
NADPH-dependent FMN reductase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9NZJ1_9DELT
NADPH-dependent FMN reductase {ECO:0000313|EMBL:EPX55447.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" sour
NADPH-dependent fmn reductase
13_2_20cm_2_scaffold_1381_13
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12712..14775)
DNA (2064bp) protein (688aa)
isoquinoline 1-oxidoreductase beta subunit (EC:1.3.99.16)
aldehyde dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036CAC3D
Uncharacterized protein {ECO:0000313|EMBL:EJZ30254.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
13_2_20cm_2_scaffold_1381_14
unknown

Not on your lists

comp(15481..15789)
DNA (309bp) protein (103aa)

This feature has no annotations

13_2_20cm_2_scaffold_1381_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16434..17507)
DNA (1074bp) protein (358aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASE8_RUBXD
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
D-isomer specific 2-hydroxyacid dehydrogenase
13_2_20cm_2_scaffold_1381_16
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17623..18837
DNA (1215bp) protein (405aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS46911.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
extracellular ligand-binding receptor id=14625347 bin=bin7_NC10_sister species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
extracellular ligand-binding receptor
13_2_20cm_2_scaffold_1381_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18881..19729
DNA (849bp) protein (283aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein id=14625346 bin=bin7_NC10_sister species=Achromobacter arsenitoxydans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
inner-membrane translocator
13_2_20cm_2_scaffold_1381_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19975..20571
DNA (597bp) protein (199aa)
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein id=14625345 bin=bin7_NC10_sister species=Bacillus sp. ZYK genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
branched-chain amino acid ABC transporter permease
13_2_20cm_2_scaffold_1381_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

20568..21860
DNA (1293bp) protein (431aa)
putative ribose/galactose/methyl galactoside import ATP-binding protein-like Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein id=14625342 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
ABC transporter
13_2_20cm_2_scaffold_1381_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(21966..22226)
DNA (261bp) protein (87aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=2228893 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_1381_21
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22241..22639)
DNA (399bp) protein (133aa)
Putative sugar ABC transporter, permease protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTP2_9BRAD
Sugar ABC transporter permease {ECO:0000313|EMBL:ETW99078.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY
ABC transporter permease
13_2_20cm_2_scaffold_1381_22
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22641..23588)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DMD8_BRAJP
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:KGT73303.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japon
13_2_20cm_2_scaffold_1381_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(23591..24886)
DNA (1296bp) protein (432aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein id=14627267 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_2_scaffold_1381_24
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25500..26021
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037252B4
DsrE/DsrF-like family protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
hypothetical protein
13_2_20cm_2_scaffold_1381_25

Not on your lists

26053..26799
DNA (747bp) protein (249aa)
Maleate cis-trans isomerase n=1 Tax=uncultured Chloroflexi bacterium HF0500_03M05 RepID=E0XY61_9CHLR rbh
Maleate cis-trans isomerase {ECO:0000313|EMBL:ADI19352.1}; TaxID=710737 species="Bacteria; Chloroflexi; environmental samples.;" source="uncultured Chloroflexi bacterium HF0500_03M05.;"
Asp/Glu/hydantoin racemase
13_2_20cm_2_scaffold_1381_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(26826..27647)
DNA (822bp) protein (274aa)
nadE; glutamine-dependent NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] Tax=CSP1_6_Rokubacteria
nadE; glutamine-dependent NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] id=14625812 bin=bin7_NC10_sister species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
NH(3)-dependent NAD(+) synthetase (EC:6.3.1.5)
13_2_20cm_2_scaffold_1381_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(27596..28432)
DNA (837bp) protein (279aa)
NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nadE; glutamine-dependent NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] id=14625812 bin=bin7_NC10_sister species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
NAD+ synthase
13_2_20cm_2_scaffold_1381_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

28804..29154
DNA (351bp) protein (117aa)
Histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Multi-sensor hybrid histidine kinase id=4333672 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine kinase
13_2_20cm_2_scaffold_1381_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(29247..30347)
DNA (1101bp) protein (367aa)
hypothetical protein; K06966 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Possible lysine decarboxylase family id=4476360 bin=GWF2_Methylomirabilis_70_14 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_1381_30
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(30364..31239)
DNA (876bp) protein (292aa)
DMT(Drug/metabolite transporter) superfamily permease id=4759440 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
Displaying items 1-30 of 35 in total

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