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13_2_20cm_2_scaffold_50

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Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_50_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

179..1150
DNA (972bp) protein (324aa)
aceA; isocitrate lyase (EC:2.7.8.23) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Isocitrate lyase id=3087646 bin=GWC2_Methylomirabilis_70_16 species=Haladaptatus paucihalophilus genus=Haladaptatus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
isocitrate lyase
13_2_20cm_2_scaffold_50_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1251..2948
DNA (1698bp) protein (566aa)
hypothetical protein SinuC_10776 id=3779760 bin=GWA2_Methylomirabilis_73_35 species=Sporolactobacillus inulinus genus=Sporolactobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
amino acid permease-associated protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_2_scaffold_50_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3052..3972
DNA (921bp) protein (307aa)
DNA-3-methyladenine glycosylase II (EC:3.2.2.21); K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA-3-methyladenine glycosylase II (EC:3.2.2.21)
DNA-3-methyladenine glycosylase II id=2197712 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_50_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4268..5707
DNA (1440bp) protein (480aa)
EmrB/QacA family drug resistance transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
EmrB/QacA family drug resistance transporter id=2197710 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
EmrB/QacA subfamily drug resistance transporter
13_2_20cm_2_scaffold_50_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5710..6213
DNA (504bp) protein (168aa)
hypothetical protein id=2197709 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_2_scaffold_50_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6379..6777
DNA (399bp) protein (133aa)
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein id=14627149 bin=bin7_NC10_sister species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_2_scaffold_50_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6778..8694
DNA (1917bp) protein (639aa)
ABC transporter-like protein; K06158 ATP-binding cassette, subfamily F, member 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related id=2197706 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein
13_2_20cm_2_scaffold_50_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8691..9008
DNA (318bp) protein (106aa)
HNH endonuclease family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HNH endonuclease family protein id=2197705 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HNH endonuclease family protein
13_2_20cm_2_scaffold_50_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9114..9431
DNA (318bp) protein (106aa)
helix-hairpin-helix repeat-containing competence protein ComEA; K02237 competence protein ComEA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Competence protein ComEA helix-hairpin-helix repeat protein id=2197704 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA uptake protein related DNA-binding protein
13_2_20cm_2_scaffold_50_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9912..10112)
DNA (201bp) protein (67aa)
Cold-shock DNA-binding domain protein id=4560666 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=GWA2_Rokubacteria_70_23_curated
cold-shock DNA-binding domain-containing protein
13_2_20cm_2_scaffold_50_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10432..10632)
DNA (201bp) protein (67aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Cold-shock DNA-binding domain protein id=4622878 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cold-shock protein
13_2_20cm_2_scaffold_50_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10836..11867)
DNA (1032bp) protein (344aa)
thiol-disulfide oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thiol-disulfide oxidoreductase domain-containing protein id=14627159 bin=bin7_NC10_sister species=Sulfitobacter sp. EE-36 genus=Sulfitobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
thiol-disulfide oxidoreductase domain-containing protein
13_2_20cm_2_scaffold_50_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12339..13370
DNA (1032bp) protein (344aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
mreB; Rod shape-determining protein mreB id=14626892 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rod shape-determining protein MreB
13_2_20cm_2_scaffold_50_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13396..14232
DNA (837bp) protein (279aa)
Cell shape-determining protein MreC id=4317185 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 293 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative cell shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=GWA2_Rokubacteria_73_35_curated
rod shape-determining protein MreC
13_2_20cm_2_scaffold_50_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14245..14724
DNA (480bp) protein (160aa)
Putative uncharacterized protein id=4317186 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K03571 rod shape-determining protein MreD Tax=GWA2_Rokubacteria_73_35_curated
Rod shape-determining protein MreD
13_2_20cm_2_scaffold_50_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14775..16523
DNA (1749bp) protein (583aa)
mrdA; penicillin-binding protein 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell elongation specific D,D-transpeptidase id=4317187 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrdA; penicillin-binding protein 2
13_2_20cm_2_scaffold_50_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16528..17619
DNA (1092bp) protein (364aa)
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rod shape-determining protein RodA id=3227259 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
rod shape-determining protein RodA
13_2_20cm_2_scaffold_50_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17674..19218
DNA (1545bp) protein (515aa)
Rne/Rng family ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNAse G id=3227257 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribonuclease
13_2_20cm_2_scaffold_50_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19405..19770
DNA (366bp) protein (122aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3927613 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_50_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19834..20115
DNA (282bp) protein (94aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3927621 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_2_scaffold_50_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20115..22352
DNA (2238bp) protein (746aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
copA; Cu(2+)-binding/translocating P-type ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4] id=14626885 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
heavy metal translocating P-type ATPase
13_2_20cm_2_scaffold_50_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22393..22569
DNA (177bp) protein (59aa)
YHS domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
YHS domain protein id=3927626 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YHS domain-containing protein
13_2_20cm_2_scaffold_50_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22573..23454
DNA (882bp) protein (294aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3927628 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_50_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23440..24357)
DNA (918bp) protein (306aa)
glutamate formiminotransferase (EC:2.1.2.5); K00603 glutamate formiminotransferase [EC:2.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glutamate formiminotransferase (EC:2.1.2.5); K00603 glutamate formiminotransferase [EC:2.1.2.5] id=14626883 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamate formiminotransferase (EC:2.1.2.5)
13_2_20cm_2_scaffold_50_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24381..25400
DNA (1020bp) protein (340aa)
AIR synthase-like protein Tax=GWA2_Rokubacteria_73_35_curated
AIR synthase-like protein id=14626878 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
AIR synthase-like protein domain-containing protein
13_2_20cm_2_scaffold_50_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25403..27001
DNA (1599bp) protein (533aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=GWA2_Rokubacteria_73_35_curated
gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase id=3927636 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_2_scaffold_50_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27001..27495
DNA (495bp) protein (165aa)
hypothetical protein id=3927638 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_2_scaffold_50_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27449..28690)
DNA (1242bp) protein (414aa)
1,4-alpha-glucan branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1,4-alpha-glucan branching enzyme GlgB id=4799905 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar kinase
13_2_20cm_2_scaffold_50_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28764..30437)
DNA (1674bp) protein (558aa)
treS; trehalose synthase (EC:5.4.99.16)
trehalose synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Trehalose synthase id=4882695 bin=GWC2_Methylomirabilis_70_24 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_2_scaffold_50_30
unknown

Not on your lists

comp(30905..31054)
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying items 1-30 of 44 in total

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