ggKbase home page

14_0903_02_30cm_scaffold_11

Search features with annotation key words

Displaying items 1-30 of 204 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0903_02_30cm_scaffold_11_1
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(2..310)
DNA (309bp) protein (103aa)
Transposase IS4 family protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J678_ANAD2
transposase IS4 family protein
Tax=RBG_16_NC10_65_8_curated
14_0903_02_30cm_scaffold_11_2
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(466..2316)
DNA (1851bp) protein (617aa)
two-component sensor histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000376C159
Tax=RBG_16_Planctomycetes_55_9_curated
14_0903_02_30cm_scaffold_11_3
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(2313..3005)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00035F4107
winged helix family two component transcriptional regulator
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
14_0903_02_30cm_scaffold_11_4
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(3208..3948)
DNA (741bp) protein (247aa)
succinate dehydrogenase/fumarate reductase iron-sulfur subunit (EC:1.3.99.1)
Succinate dehydrogenase subunit B {ECO:0000313|EMBL:ABQ90775.1}; EC=1.3.5.1 {ECO:0000313|EMBL:ABQ90775.1};; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Succinate dehydrogenase subunit B n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UVX2_ROSS1
14_0903_02_30cm_scaffold_11_5
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(4043..5956)
DNA (1914bp) protein (638aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit {ECO:0000313|EMBL:ABU59134.1}; EC=1.3.99.1 {ECO:0000313|EMBL:ABU59134.1};; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NNJ3_ROSCS
14_0903_02_30cm_scaffold_11_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6087..6764)
DNA (678bp) protein (226aa)
Succinate dehydrogenase cytochrome b subunit n=1 Tax=uncultured bacterium A1Q1_fos_515 RepID=L7VQV0_9BACT
sdhC; succinate dehydrogenase cytochrome b-556 subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0903_02_30cm_scaffold_11_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

7103..8203
DNA (1101bp) protein (367aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029K9_SOLUE rbh
integral membrane sensor signal transduction histidine kinase rbh
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABJ82267.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
14_0903_02_30cm_scaffold_11_8
unknown

Not on your lists

8200..8364
DNA (165bp) protein (55aa)

This feature has no annotations

14_0903_02_30cm_scaffold_11_9
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

8361..8963
DNA (603bp) protein (201aa)
transcriptional regulator n=1 Tax=Meiothermus timidus RepID=UPI00035DB0D2 rbh
two component LuxR family transcriptional regulator
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:AGK04496.1}; TaxID=504728 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21); (Thermus ruber).;"
14_0903_02_30cm_scaffold_11_10
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8941..10254)
DNA (1314bp) protein (438aa)
5'-nucleotidase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QR56_9DELT
5'-nucleotidase {ECO:0000313|EMBL:EPX63794.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
5'-nucleotidase
14_0903_02_30cm_scaffold_11_11
Brachybacterium faecium, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10310..10900)
DNA (591bp) protein (197aa)
DNA polymerase III, subunit gamma/tau n=1 Tax=Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860) RepID=C7MHU5_BRAFD
DNA polymerase III, subunit gamma/tau
DNA polymerase III, subunit gamma/tau {ECO:0000313|EMBL:ACU86612.1}; TaxID=446465 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860).;"
14_0903_02_30cm_scaffold_11_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(10977..12476)
DNA (1500bp) protein (500aa)
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] id=12556043 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
14_0903_02_30cm_scaffold_11_13
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

12647..13705
DNA (1059bp) protein (353aa)
SPFH domain / band 7 family membrane protein id=1906841 bin=GWB2_CP_45_9 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
inner membrane protein, band 7 family
Tax=GWF2_WOR_2_43_52_curated
14_0903_02_30cm_scaffold_11_14
RifOxyA12_full_Desulfobacterales_46_15_curated, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13714..14724
DNA (1011bp) protein (337aa)
SPFH domain / band 7 family membrane protein n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NSC5_DESTT
SPFH domain / band 7 family membrane protein
Tax=RifOxyA12_full_Desulfobacterales_46_15_curated
14_0903_02_30cm_scaffold_11_15
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14726..15361
DNA (636bp) protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:KFA93710.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
14_0903_02_30cm_scaffold_11_16
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15309..15782
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WBY9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ77668.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
14_0903_02_30cm_scaffold_11_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15809..16330
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036BB609
DinB-like domain protein {ECO:0000313|EMBL:AHG92013.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
14_0903_02_30cm_scaffold_11_18
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16399..16812)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KPB1_SOLCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD05809.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
14_0903_02_30cm_scaffold_11_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

16924..18261
DNA (1338bp) protein (446aa)
Na+/H+ dicarboxylate symporter {ECO:0000313|EMBL:CDM66034.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Proton/sodium-glutamate symport protein id=4435320 bin=GWF2_Melioribacter_38_21 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
sodium:dicarboxylate symporter family protein
14_0903_02_30cm_scaffold_11_20
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

18384..19406
DNA (1023bp) protein (341aa)
Cell wall hydrolase/autolysin n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V2T4_TERSS
cell wall hydrolase/autolysin
Tax=RBG_13_Acidobacteria_68_16_curated
14_0903_02_30cm_scaffold_11_21
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

19399..20418
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F1U5_9DELT
mreB; putative rod shape-determining protein MreB
Tax=RBG_13_Acidobacteria_68_16_curated
14_0903_02_30cm_scaffold_11_22
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20611..22572
DNA (1962bp) protein (654aa)
serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] id=12557219 bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP37213.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
14_0903_02_30cm_scaffold_11_23
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22625..23023
DNA (399bp) protein (133aa)
biopolymer transporter ExbD n=1 Tax=Rhizobium mongolense RepID=UPI0003B4C318
Biopolymer transport protein exbD {ECO:0000313|EMBL:CDM59075.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
tolR; biopolymer transporter protein ExbD/TolR
14_0903_02_30cm_scaffold_11_24
unknown

Not on your lists

comp(22852..23535)
DNA (684bp) protein (228aa)

This feature has no annotations

14_0903_02_30cm_scaffold_11_25
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23599..28419)
DNA (4821bp) protein (1607aa)
NAD-specific glutamate dehydrogenase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AE86_AZOBR
NAD-glutamate dehydrogenase {ECO:0000313|EMBL:KJB95525.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
gdhB; NAD-specific glutamate dehydrogenase
14_0903_02_30cm_scaffold_11_26
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28553..30118)
DNA (1566bp) protein (522aa)
Putative aminopeptidase n=1 Tax=Glaciecola nitratireducens (strain JCM 12485 / KCTC 12276 / FR1064) RepID=G4QET8_GLANF rbh
Peptidase M28 family protein {ECO:0000313|EMBL:GAO39771.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
aminopeptidase rbh
14_0903_02_30cm_scaffold_11_27
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30232..30441)
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L141_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96414.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
14_0903_02_30cm_scaffold_11_28
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30584..33571
DNA (2988bp) protein (996aa)
DNA/RNA helicase, superfamily II, SNF2 family n=1 Tax=Pseudomonas sp. GM18 RepID=J2NW78_9PSED rbh
SNF2 family helicase rbh
Tax=CG_Delta_07
14_0903_02_30cm_scaffold_11_29
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33568..34734
DNA (1167bp) protein (389aa)
Metallophosphoesterase n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5U3U0_ALCXX
DNA double-strand break repair protein Mre11
Tax=CG_Delta_07
14_0903_02_30cm_scaffold_11_30
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34734..38036
DNA (3303bp) protein (1101aa)
Tax=CG_Delta_07
Displaying items 1-30 of 204 in total

View Taxonomy