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14_0903_12_30cm_scaffold_38

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Displaying items 1-30 of 101 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0903_12_30cm_scaffold_38_1
unknown

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3..110
DNA (108bp) protein (36aa)

This feature has no annotations

14_0903_12_30cm_scaffold_38_2
Amphibacillus xylanus, Amphibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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425..1309
DNA (885bp) protein (295aa)
Tyrosine recombinase XerD n=1 Tax=Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01) RepID=K0J7E5_AMPXN
xerD; tyrosine recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=698758 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Amphibacillus.;" source="Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG; 17667 / NBRC 15112 / Ep01).;"
14_0903_12_30cm_scaffold_38_3
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1817..2284)
DNA (468bp) protein (156aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=477974 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
Ribonuclease H n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I5L6_DESAP
ribonuclease H
14_0903_12_30cm_scaffold_38_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2281..2985)
DNA (705bp) protein (235aa)
hypothetical protein id=14627037 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
14_0903_12_30cm_scaffold_38_trna_3
unknown

Not on your lists

comp(3005..3076)
DNA (72bp)
transferRNA Met
14_0903_12_30cm_scaffold_38_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3104..4948)
DNA (1845bp) protein (615aa)
RNA polymerase sigma factor RpoD id=3214743 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpoD; RNA polymerase sigma factor RpoD
Tax=GWA2_Rokubacteria_70_23_curated
14_0903_12_30cm_scaffold_38_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4941..6818)
DNA (1878bp) protein (626aa)
DNA primase id=4785564 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA primase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0903_12_30cm_scaffold_38_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6818..9208)
DNA (2391bp) protein (797aa)
MutS2 protein id=4948647 bin=GWC2_Methylomirabilis_70_24 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
MutS2 protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0903_12_30cm_scaffold_38_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9276..9533)
DNA (258bp) protein (86aa)
30S ribosomal protein S21 id=4785572 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsU; 30S ribosomal protein S21
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0903_12_30cm_scaffold_38_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9572..10807
DNA (1236bp) protein (412aa)
Transporter, UIT6 family id=4785574 bin=GWA2_Methylomirabilis_73_35 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10804..11331)
DNA (528bp) protein (176aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=4785576 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0903_12_30cm_scaffold_38_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(11347..12054)
DNA (708bp) protein (236aa)
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 id=14627044 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0903_12_30cm_scaffold_38_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12065..13003)
DNA (939bp) protein (313aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1) rbh
Ribose-phosphate pyrophosphokinase id=4526388 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0903_12_30cm_scaffold_38_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13000..13896)
DNA (897bp) protein (299aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=4948657 bin=GWC2_Methylomirabilis_70_24 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0903_12_30cm_scaffold_38_trna_2
unknown

Not on your lists

comp(13026..13097)
DNA (72bp)
transferRNA Gln
14_0903_12_30cm_scaffold_38_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13961..14464)
DNA (504bp) protein (168aa)
id=14627047 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14706..16892)
DNA (2187bp) protein (729aa)
Tetratricopeptide repeat family protein id=4526378 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein rbh
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

16989..18353
DNA (1365bp) protein (455aa)
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] id=14627050 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
RNA methyltransferase
Tax=CSP1_6_Rokubacteria
14_0903_12_30cm_scaffold_38_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18350..19267
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dppB; dipeptide transport system permease DppB
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19346..20227
DNA (882bp) protein (294aa)
Binding-protein-dependent transport systems inner membrane component id=3820149 bin=GWC2_Methylomirabilis_70_16 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
binding-protein-dependent transporters inner membrane component rbh
Tax=GWC2_Rokubacteria_70_16_curated
14_0903_12_30cm_scaffold_38_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20224..20799)
DNA (576bp) protein (192aa)
Hypothetical membrane protein id=3950581 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0903_12_30cm_scaffold_38_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20841..23204
DNA (2364bp) protein (788aa)
Dead/deah box helicase id=4193701 bin=GWC2_Methylomirabilis_70_16 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dead/deah box helicase
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23188..24423
DNA (1236bp) protein (412aa)
Putative uncharacterized protein id=4526305 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0903_12_30cm_scaffold_38_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24407..25366)
DNA (960bp) protein (320aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC:1.1.1.26) id=14627670 bin=bin7_NC10_sister species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=bin7_NC10_sister organism_group=NC10
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC:1.1.1.26)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0903_12_30cm_scaffold_38_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25530..25817
DNA (288bp) protein (96aa)
10 kDa chaperonin id=2197768 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Co-chaperonin GroES
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25846..27468
DNA (1623bp) protein (541aa)
60 kDa chaperonin id=2197767 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
groL; 60 kDa chaperonin (Protein Cpn60) (groEL protein) rbh
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


27607..27948
DNA (342bp) protein (114aa)
30S ribosomal protein S6 id=2197766 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S6
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27948..28367
DNA (420bp) protein (140aa)
Single-stranded DNA-binding protein id=2197765 bin=GWA2_Methylomirabilis_73_35 species=Methylacidiphilum infernorum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ssb; Single-stranded DNA-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


28651..29094
DNA (444bp) protein (148aa)
50S ribosomal protein L9 id=2197764 bin=GWA2_Methylomirabilis_73_35 species=Desulfosporosinus sp. OT genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplI; 50S ribosomal protein L9
Tax=GWA2_Rokubacteria_73_35_curated
14_0903_12_30cm_scaffold_38_28
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

29293..30666
DNA (1374bp) protein (458aa)
replicative DNA helicase (EC:3.6.1.-)
Primary replicative DNA helicase id=4193627 bin=GWC2_Methylomirabilis_70_16 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
Displaying items 1-30 of 101 in total

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