ggKbase home page

14_0903_13_30cm_scaffold_609141

Search features with annotation key words

Displaying 30 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0903_13_30cm_scaffold_609141_1

Not on your lists

1..141
DNA (141bp) protein (47aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49264.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
14_0903_13_30cm_scaffold_609141_2
unknown

Not on your lists

104..655
DNA (552bp) protein (184aa)

This feature has no annotations

14_0903_13_30cm_scaffold_609141_3

Not on your lists

935..1564
DNA (630bp) protein (210aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Methionine-R-sulfoxide reductase id=4679995 bin=GWA2_OP3_53_43 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
14_0903_13_30cm_scaffold_609141_4

Not on your lists

comp(1855..2781)
DNA (927bp) protein (309aa)
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKQ0_SINAD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49267.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
14_0903_13_30cm_scaffold_609141_5

Not on your lists

comp(2914..3645)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R5L3_ISOPI
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49268.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
14_0903_13_30cm_scaffold_609141_6

Not on your lists

comp(3727..4230)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWK8_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49269.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
14_0903_13_30cm_scaffold_609141_7

Not on your lists

comp(4339..5256)
DNA (918bp) protein (306aa)
Aldo/keto reductase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08P32_STIAD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49270.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
aldo/keto reductase family protein
14_0903_13_30cm_scaffold_609141_8

Not on your lists

5410..6531
DNA (1122bp) protein (374aa)
epimerase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B34722
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49271.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
14_0903_13_30cm_scaffold_609141_9

Not on your lists

6589..7905
DNA (1317bp) protein (439aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49272.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative uncharacterized protein id=2153509 bin=GWD2_Deltaproteobacteria_55_8 species=Methylobacterium nodulans genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
major facilitator superfamily domain-containing protein
14_0903_13_30cm_scaffold_609141_10

Not on your lists

8007..8432
DNA (426bp) protein (142aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49273.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Peroxiredoxin osmC id=4936714 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
peroxiredoxin
14_0903_13_30cm_scaffold_609141_11

Not on your lists

comp(8601..10085)
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C8385
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49274.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
peptidase M20
14_0903_13_30cm_scaffold_609141_12

Not on your lists

comp(10089..12287)
DNA (2199bp) protein (733aa)
DNA polymerase {ECO:0000256|RuleBase:RU000442}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU000442};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
DNA polymerase id=3920271 bin=GWF2_Lentisphaerae_57_35 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
DNA polymerase B region
14_0903_13_30cm_scaffold_609141_13
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

12386..13723
DNA (1338bp) protein (446aa)
Amidohydrolase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8I4_9BACT
M20 (Carboxypeptidase Ss1) subfamily protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
14_0903_13_30cm_scaffold_609141_14

Not on your lists

comp(13831..15177)
DNA (1347bp) protein (449aa)
Cell division protein FtsZ n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Y9_9BACT
Cell division protein FtsZ {ECO:0000256|RuleBase:RU000631}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cell division protein FtsZ
14_0903_13_30cm_scaffold_609141_15

Not on your lists

comp(15329..16537)
DNA (1209bp) protein (403aa)
Cell division protein ftsA n=2 Tax=Chthoniobacter flavus RepID=B4D1Z0_9BACT
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cell division protein FtsA
14_0903_13_30cm_scaffold_609141_16

Not on your lists

comp(16543..17610)
DNA (1068bp) protein (356aa)
Polypeptide-transport-associated domain protein FtsQ-type n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z1_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48687.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cell division septal protein
14_0903_13_30cm_scaffold_609141_17

Not on your lists

comp(17607..18536)
DNA (930bp) protein (310aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z2_9BACT
14_0903_13_30cm_scaffold_609141_18

Not on your lists

comp(18538..20868)
DNA (2331bp) protein (777aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|SAAS:SAAS00041869}; EC=1.-.-.- {ECO:0000256|SAAS:SAAS00274693};; EC=1.3.1.98 {ECO:0000256|SAAS:SAAS00057125};; EC=6.3.2.8 {ECO:0000256|SAAS:SAAS00243344};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramate/alanine ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z4_9BACT
UDP-N-acetylmuramate--L-alanine ligase
14_0903_13_30cm_scaffold_609141_19

Not on your lists

comp(20852..21658)
DNA (807bp) protein (269aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z5_9BACT
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
14_0903_13_30cm_scaffold_609141_20

Not on your lists

comp(21667..21924)
DNA (258bp) protein (86aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744971
14_0903_13_30cm_scaffold_609141_21

Not on your lists

comp(21959..23101)
DNA (1143bp) protein (381aa)
Cell cycle protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z6_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48691.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cell division protein FtsW
14_0903_13_30cm_scaffold_609141_22

Not on your lists

comp(23682..26060)
DNA (2379bp) protein (793aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Z8_9BACT
UDP-N-acetylmuramoylalanine--D-glutamate ligase
14_0903_13_30cm_scaffold_609141_23

Not on your lists

comp(26057..27451)
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D200_9BACT
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
14_0903_13_30cm_scaffold_609141_24

Not on your lists

comp(27525..29012)
DNA (1488bp) protein (496aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D201_9BACT
UDP-N-acetylmuramyl tripeptide synthetase
14_0903_13_30cm_scaffold_609141_25

Not on your lists

comp(29041..30831)
DNA (1791bp) protein (597aa)
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D201_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48697.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ftsI; Cell division protein FtsI
14_0903_13_30cm_scaffold_609141_26

Not on your lists

comp(31168..32118)
DNA (951bp) protein (317aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D203_9BACT
S-adenosyl-methyltransferase MraW
14_0903_13_30cm_scaffold_609141_27

Not on your lists

comp(32216..32671)
DNA (456bp) protein (152aa)
Protein MraZ n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D204_9BACT
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
MraZ protein
14_0903_13_30cm_scaffold_609141_28

Not on your lists

33419..34066
DNA (648bp) protein (216aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP4_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48702.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tolQ; MotA/TolQ/ExbB proton channel family protein
14_0903_13_30cm_scaffold_609141_29

Not on your lists

34443..34607
DNA (165bp) protein (55aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48703.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
14_0903_13_30cm_scaffold_609141_30

Not on your lists

34604..35275
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVP2_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48704.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 30 items

View Taxonomy