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14_0927_12_40cm_scaffold_3124

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0927_12_40cm_scaffold_3124_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

278..859
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F61D9
metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
14_0927_12_40cm_scaffold_3124_2
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

988..2442
DNA (1455bp) protein (485aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036863FB
putative plasma glutamate carboxypeptidase
Putative plasma glutamate carboxypeptidase {ECO:0000313|EMBL:AIE86524.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
14_0927_12_40cm_scaffold_3124_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2554..3840
DNA (1287bp) protein (429aa)
gcpE; 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] id=12554811 bin=CNBR_ACIDO species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
14_0927_12_40cm_scaffold_3124_4
unknown

Not on your lists

3865..4503
DNA (639bp) protein (213aa)

This feature has no annotations

14_0927_12_40cm_scaffold_3124_5
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

4500..4802
DNA (303bp) protein (101aa)
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] id=14426607 bin=bin1_lowGC species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
aspartyl/glutamyl-tRNA amidotransferase subunit C
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_0927_12_40cm_scaffold_3124_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

4863..6302
DNA (1440bp) protein (480aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=GATA_KORVE
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
14_0927_12_40cm_scaffold_3124_7
unknown

Not on your lists

6474..6866
DNA (393bp) protein (131aa)

This feature has no annotations

14_0927_12_40cm_scaffold_3124_8
unknown

Not on your lists

7101..7319
DNA (219bp) protein (73aa)

This feature has no annotations

14_0927_12_40cm_scaffold_3124_9
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

7487..8497
DNA (1011bp) protein (337aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKE1_KORVE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
14_0927_12_40cm_scaffold_3124_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(8567..11251)
DNA (2685bp) protein (895aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQS3_KORVE
signal transduction histidine kinase, nitrogen specific, NtrB
14_0927_12_40cm_scaffold_3124_11
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11434..13680)
DNA (2247bp) protein (749aa)
DNA-directed RNA polymerase subunit beta-prime n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=UPI0000D76CD4
DNA-directed RNA polymerase subunit beta-prime
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
14_0927_12_40cm_scaffold_3124_12
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(13745..15556)
DNA (1812bp) protein (604aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6 3.5.1.16)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000366E9F6
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_0927_12_40cm_scaffold_3124_13
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15703..20058)
DNA (4356bp) protein (1452aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037B6E38
DNA-directed RNA polymerase subunit beta
14_0927_12_40cm_scaffold_3124_14
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(20290..20670)
DNA (381bp) protein (127aa)
50S ribosomal protein L7 n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037693CE
rplL; 50S ribosomal protein L7/L12
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_0927_12_40cm_scaffold_3124_15
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


comp(20707..21273)
DNA (567bp) protein (189aa)
50S ribosomal protein L10 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VA9_SOLUE
rplJ; 50S ribosomal protein L10
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_0927_12_40cm_scaffold_3124_16
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


comp(21303..22013)
DNA (711bp) protein (237aa)
50S ribosomal protein L1 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=RL1_SOLUE
rplA; 50S ribosomal protein L1
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_0927_12_40cm_scaffold_3124_17
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists


comp(22047..22478)
DNA (432bp) protein (144aa)
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=12555599 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplK; 50S ribosomal protein L11
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
14_0927_12_40cm_scaffold_3124_18
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(22550..23083)
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHG9_KORVE
transcription antitermination protein nusG
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_0927_12_40cm_scaffold_3124_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(23100..23378)
DNA (279bp) protein (93aa)
Protein translocase subunit SecE n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHG8_KORVE
protein translocation complex subunit SecE
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
14_0927_12_40cm_scaffold_3124_trna_1
unknown

Not on your lists

comp(23460..23531)
DNA (72bp)
transferRNA Trp
14_0927_12_40cm_scaffold_3124_20
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


comp(23574..23723)
DNA (150bp) protein (50aa)
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 id=17522682 bin=RBG_16_Aminicenantes_63_14 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
50S ribosomal protein L33
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_0927_12_40cm_scaffold_3124_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(23750..23974)
DNA (225bp) protein (75aa)
tuf2; elongation factor Tu id=24458186 bin=RBG_19FT_COMBO_GAL15_69_19 species=Veillonella dispar genus=Veillonella taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
translation elongation factor Tu
Translation elongation factor-like GTPase {ECO:0000313|EMBL:CDM64010.1}; Flags: Fragment;; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Displaying 22 items

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