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14_0929_02_30cm_scaffold_452

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Displaying items 1-30 of 74 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_02_30cm_scaffold_452_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(159..734)
DNA (576bp) protein (192aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(862..1599)
DNA (738bp) protein (246aa)
putative uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase id=4954851 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_30cm_scaffold_452_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1629..2540
DNA (912bp) protein (304aa)
asrgl; L-asparaginase (Asparaginase-like protein 1) (EC:3.5.1.1) id=14430159 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
peptidase T2, asparaginase 2
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_02_30cm_scaffold_452_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

2540..3769
DNA (1230bp) protein (410aa)
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19] id=14625075 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
L-threonine ammonia-lyase (EC:4.3.1.19)
Tax=CSP1_6_Rokubacteria
14_0929_02_30cm_scaffold_452_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3867..4478)
DNA (612bp) protein (204aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase id=3708850 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4570..4971)
DNA (402bp) protein (134aa)
Transcriptional regulator, TraR/DksA family id=3708851 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TraR/DksA family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5207..7159)
DNA (1953bp) protein (651aa)
acsA; acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) (EC:6.2.1.1) rbh
Acetyl-coenzyme A synthetase id=4892762 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
14_0929_02_30cm_scaffold_452_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7300..8670)
DNA (1371bp) protein (457aa)
General substrate transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ97_NITHX
general substrate transporter
General substrate transporter {ECO:0000313|EMBL:ABE61600.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
14_0929_02_30cm_scaffold_452_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8880..10295)
DNA (1416bp) protein (472aa)
malate dehydrogenase (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate decarboxylating) id=3708970 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_10
unknown

Not on your lists

10458..10640
DNA (183bp) protein (61aa)

This feature has no annotations

14_0929_02_30cm_scaffold_452_11
unknown

Not on your lists

comp(10609..11097)
DNA (489bp) protein (163aa)

This feature has no annotations

14_0929_02_30cm_scaffold_452_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11334..13181
DNA (1848bp) protein (616aa)
Putative uncharacterized protein id=3708972 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_30cm_scaffold_452_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

13195..13818
DNA (624bp) protein (208aa)
DinB family protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EMN8_9CHLR
DinB family protein
Tax=RBG_16_Acidobacteria_70_10_curated
14_0929_02_30cm_scaffold_452_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13815..16070
DNA (2256bp) protein (752aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
hypothetical protein n=1 Tax=Streptomyces sp. CNY243 RepID=UPI0003740A8E
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
14_0929_02_30cm_scaffold_452_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16324..16704)
DNA (381bp) protein (127aa)
RNP-1 like RNA-binding protein id=3708973 bin=GWA2_Methylomirabilis_73_35 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbpA; RNA-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_30cm_scaffold_452_16
unknown

Not on your lists

comp(16858..17070)
DNA (213bp) protein (71aa)

This feature has no annotations

14_0929_02_30cm_scaffold_452_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17070..17423)
DNA (354bp) protein (118aa)
Transcriptional regulatory protein GlrR id=3708975 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_02_30cm_scaffold_452_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17584..18942)
DNA (1359bp) protein (453aa)
Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator id=14625085 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18939..21938)
DNA (3000bp) protein (1000aa)
multi-sensor hybrid histidine kinase id=14625086 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21935..23527)
DNA (1593bp) protein (531aa)
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] id=14625087 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23676..24980)
DNA (1305bp) protein (435aa)
Amidase id=5037265 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Amidase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_22
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(24967..26817)
DNA (1851bp) protein (617aa)
Methylenetetrahydrofolate reductase id=4884112 bin=GWC2_Methylomirabilis_70_24 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
14_0929_02_30cm_scaffold_452_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26801..27322)
DNA (522bp) protein (174aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase id=4780140 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_02_30cm_scaffold_452_24
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27522..29693)
DNA (2172bp) protein (724aa)
aldehyde dehydrogenase (EC:1.3.99.16)
Tat (Twin-arginine translocation) pathway signal sequence n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P474_9BRAD
Tat (Twin-arginine translocation) pathway signal sequence {ECO:0000313|EMBL:EKS33223.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
14_0929_02_30cm_scaffold_452_25
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29690..30148)
DNA (459bp) protein (153aa)
(2Fe-2S)-binding protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILY8_KORVE
Aldehyde dehydrogenase small subunit {ECO:0000313|EMBL:GAN77871.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
(2Fe-2S)-binding protein
14_0929_02_30cm_scaffold_452_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(30398..31387)
DNA (990bp) protein (330aa)
Putative uncharacterized protein id=3132984 bin=GWF2_Methylomirabilis_70_14 species=Geitlerinema sp. PCC 7407 genus=Geitlerinema taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
14_0929_02_30cm_scaffold_452_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(31430..32173)
DNA (744bp) protein (248aa)
Vitamin B12 dependent methionine synthase id=4780179 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
vitamin B12 dependent methionine synthase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(32227..33156)
DNA (930bp) protein (310aa)
Homocysteine S-methyltransferase id=4780181 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_30cm_scaffold_452_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(33153..33815)
DNA (663bp) protein (221aa)
methyltransferase cognate corrinoid protein id=14625094 bin=bin7_NC10_sister species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methyltransferase cognate corrinoid protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_30cm_scaffold_452_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(33878..35704)
DNA (1827bp) protein (609aa)
Putative transmembrane sensor domain protein id=2227968 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative Chase2 sensor protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying items 1-30 of 74 in total

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