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14_0929_02_40cm_scaffold_576

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Displaying items 1-30 of 41 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_02_40cm_scaffold_576_trna_2
unknown

Not on your lists

comp(4..76)
DNA (73bp)
transferRNA Glu
14_0929_02_40cm_scaffold_576_trna_1
unknown

Not on your lists

comp(118..194)
DNA (77bp)
transferRNA Gln
14_0929_02_40cm_scaffold_576_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(258..530)
DNA (273bp) protein (91aa)
Histone family protein DNA-binding protein id=4493677 bin=GWC2_Methylomirabilis_70_16 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
histone family protein DNA-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_40cm_scaffold_576_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(539..4099)
DNA (3561bp) protein (1187aa)
Multi-sensor signal transduction histidine kinase id=3564564 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
multi-sensor signal transduction histidine kinase
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_40cm_scaffold_576_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4158..5750
DNA (1593bp) protein (531aa)
ubiD1; 3-octaprenyl-4-hydroxybenzoate carboxylyase UbiD (EC:4.1.1.-)
3-octaprenyl-4-hydroxybenzoate carboxylyase UbiD id=3564567 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_40cm_scaffold_576_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5765..6595
DNA (831bp) protein (277aa)
4-hydroxybenzoate polyprenyltransferase id=4493686 bin=GWC2_Methylomirabilis_70_16 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
4-hydroxybenzoate polyprenyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_40cm_scaffold_576_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6714..7457
DNA (744bp) protein (248aa)
Demethylmenaquinone methyltransferase id=3564574 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ubiquinone/menaquinone biosynthesis methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_02_40cm_scaffold_576_6
unknown

Not on your lists

7512..7682
DNA (171bp) protein (57aa)

This feature has no annotations

14_0929_02_40cm_scaffold_576_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7743..9782
DNA (2040bp) protein (680aa)
dehydrogenase (EC:1.6.99.5)
Putative dehydrogenase, similar to gamma (5') and beta (3') subunits of formate dehydrogenase and to nuoE and nuoF of NADH dehydrogenase (FdhB2/C2) id=3708969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_40cm_scaffold_576_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9790..12513
DNA (2724bp) protein (908aa)
fdhA; formate dehydrogenase, alpha subunit (fdhA2) (EC:1.2.1.2)
Formate dehydrogenase, alpha subunit (FdhA2) id=4493797 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_40cm_scaffold_576_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12620..13282)
DNA (663bp) protein (221aa)
Alpha/beta hydrolase fold id=3564582 bin=GWA2_Methylomirabilis_73_35 species=Burkholderia cenocepacia genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
14_0929_02_40cm_scaffold_576_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13531..14964
DNA (1434bp) protein (478aa)
Putative uncharacterized protein id=4493806 bin=GWC2_Methylomirabilis_70_16 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein rbh
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_40cm_scaffold_576_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

14961..15917
DNA (957bp) protein (319aa)
Putative xylanase/chitin deacetylase id=3837102 bin=GWC2_Methylomirabilis_70_24 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative xylanase/chitin deacetylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_02_40cm_scaffold_576_12
unknown

Not on your lists

15961..16191
DNA (231bp) protein (77aa)
id=4958125 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
14_0929_02_40cm_scaffold_576_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16200..18551)
DNA (2352bp) protein (784aa)
Uncharacterized conserved protein UCP016719 id=3564591 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_40cm_scaffold_576_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

18586..19488
DNA (903bp) protein (301aa)
NAD-dependent epimerase/dehydratase id=4956249 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_02_40cm_scaffold_576_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

19485..19955
DNA (471bp) protein (157aa)
Membrane protein, major facilitator superfamily id=3837190 bin=GWC2_Methylomirabilis_70_24 species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_02_40cm_scaffold_576_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19905..20195)
DNA (291bp) protein (97aa)
hypothetical protein id=3564597 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_40cm_scaffold_576_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20226..21392
DNA (1167bp) protein (389aa)
major facilitator transporter id=14626825 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin7_NC10_sister organism_group=NC10 rbh
major facilitator transporter
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_02_40cm_scaffold_576_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21551..23857)
DNA (2307bp) protein (769aa)
General secretion pathway protein E, contains GAF domain id=2045751 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
gspE2; general secretion pathway protein E
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_40cm_scaffold_576_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23939..25339)
DNA (1401bp) protein (467aa)
Ferredoxin--NADP(+) reductase id=4040236 bin=GWA2_Methylomirabilis_73_35 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ferredoxin-NADP reductase rbh
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_40cm_scaffold_576_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25339..25785)
DNA (447bp) protein (149aa)
CBS domain containing protein id=4040235 bin=GWA2_Methylomirabilis_73_35 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_02_40cm_scaffold_576_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(25813..27495)
DNA (1683bp) protein (561aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase id=4257366 bin=GWF2_Methylomirabilis_70_14 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_02_40cm_scaffold_576_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(27488..28468)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035D9A9F rbh
LAO/AO transport system ATPase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_02_40cm_scaffold_576_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(28465..29892)
DNA (1428bp) protein (476aa)
phenylacetate--CoA ligase (EC:6.2.1.30) rbh
Phenylacetate--CoA ligase id=3644886 bin=GWC2_Methylomirabilis_70_24 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_02_40cm_scaffold_576_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(29889..30341)
DNA (453bp) protein (151aa)
Cobalamin B12-binding domain protein id=5018846 bin=GWA2_Methylomirabilis_73_35 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methylmalonyl-CoA mutase C-terminal domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_02_40cm_scaffold_576_25
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30491..31600
DNA (1110bp) protein (370aa)
BarH n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q092U7_STIAD
barH; barh protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
14_0929_02_40cm_scaffold_576_26
unknown

Not on your lists

31633..32511
DNA (879bp) protein (293aa)

This feature has no annotations

14_0929_02_40cm_scaffold_576_27
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32514..32747
DNA (234bp) protein (78aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S9B5_9BURK
Acyl-CoA synthetase {ECO:0000313|EMBL:KDP88528.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
AMP-dependent synthetase and ligase
14_0929_02_40cm_scaffold_576_28
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33026..34060
DNA (1035bp) protein (345aa)
AMP-dependent synthetase and ligase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SI97_THEM7
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADU51908.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
Displaying items 1-30 of 41 in total

View Taxonomy