ggKbase home page

14_0929_02_40cm_scaffold_608

Search features with annotation key words

Displaying 29 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_02_40cm_scaffold_608_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136..1140
DNA (1005bp) protein (335aa)
Aminocarboxymuconate-semialdehyde decarboxylase (Fragment) id=1937569 bin=GWD2_Deltaproteobacteria_55_8 species=Burkholderia sp. TJI49 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amidohydrolase family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
14_0929_02_40cm_scaffold_608_2
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1121..2125
DNA (1005bp) protein (335aa)
Extracellular solute-binding protein family 1 id=1937571 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
family 1 extracellular solute-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
14_0929_02_40cm_scaffold_608_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2133..3818
DNA (1686bp) protein (562aa)
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein id=14631202 bin=bin9_gal15 species=Pseudomonas agarici genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
ABC transporter inner membrane protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
14_0929_02_40cm_scaffold_608_4
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3921..4403)
DNA (483bp) protein (161aa)
Ribonuclease VapC n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QMK5_METTR
PilT domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
14_0929_02_40cm_scaffold_608_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4400..4627)
DNA (228bp) protein (76aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
14_0929_02_40cm_scaffold_608_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4673..5158)
DNA (486bp) protein (162aa)
Uncharacterized protein id=2159132 bin=GWD2_Deltaproteobacteria_55_8 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
14_0929_02_40cm_scaffold_608_7
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5148..6665)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2SGK5_9RHIZ
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
14_0929_02_40cm_scaffold_608_8
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6666..7691)
DNA (1026bp) protein (342aa)
UPI0002776920 related cluster id=2128306 bin=GWD2_Deltaproteobacteria_55_8 species=Marinobacter sp. BSs20148 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
14_0929_02_40cm_scaffold_608_9
unknown

Not on your lists

comp(7688..8167)
DNA (480bp) protein (160aa)

This feature has no annotations

14_0929_02_40cm_scaffold_608_10
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8164..9711)
DNA (1548bp) protein (516aa)
Integrin-like repeat-containing protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FNQ3_DESAA
integrin-like repeat-containing protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
14_0929_02_40cm_scaffold_608_11
unknown

Not on your lists

comp(9740..11023)
DNA (1284bp) protein (428aa)

This feature has no annotations

14_0929_02_40cm_scaffold_608_12
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11140..12603)
DNA (1464bp) protein (488aa)
UbiD family decarboxylases id=2064952 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UbiD family decarboxylase
Tax=RBG_13_Deltaproteobacteria_53_10_curated
14_0929_02_40cm_scaffold_608_13
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12611..13675)
DNA (1065bp) protein (355aa)
Reactivating factor for ethanolamine ammonia lyase id=1839689 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_53_10_curated
14_0929_02_40cm_scaffold_608_14
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14197..15267
DNA (1071bp) protein (357aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J7S0_FRASU
NAD-dependent epimerase/dehydratase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
14_0929_02_40cm_scaffold_608_15
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(15296..15721)
DNA (426bp) protein (142aa)
hypothetical protein id=4344949 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Tax=GWA2_Elusimicrobia_69_24_curated
14_0929_02_40cm_scaffold_608_16
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(15730..15990)
DNA (261bp) protein (87aa)
hypothetical protein id=4344948 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Tax=GWA2_Elusimicrobia_69_24_curated
14_0929_02_40cm_scaffold_608_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16234..17265
DNA (1032bp) protein (344aa)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase id=4770810 bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase 2
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
14_0929_02_40cm_scaffold_608_18
unknown

Not on your lists

17287..17850
DNA (564bp) protein (188aa)

This feature has no annotations

14_0929_02_40cm_scaffold_608_19
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(17886..18440)
DNA (555bp) protein (185aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase id=3212382 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Edwardsiella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
14_0929_02_40cm_scaffold_608_20
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18497..20977)
DNA (2481bp) protein (827aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00251.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
CoA-transferase family iii id=14626090 bin=bin7_NC10_sister species=Actinomadura madurae genus=Actinomadura taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
coaT; family III CoA-transferase subunit
14_0929_02_40cm_scaffold_608_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20999..22552)
DNA (1554bp) protein (518aa)
ubiD3; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD3 (EC:4.1.1.-)
UbiD2: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase id=2065167 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_02_40cm_scaffold_608_22
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(22589..23350)
DNA (762bp) protein (254aa)
Helix-turn-helix transcriptional regulator, GntR family n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A1L8_PELCD
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
14_0929_02_40cm_scaffold_608_23
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23405..24928
DNA (1524bp) protein (508aa)
Putative ethanolamine utilisation protein EutA id=1746305 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured marine microorganism HF4000_ANIW93N21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
eutA; Ethanolamine utilization protein eutA
Tax=GWD2_Deltaproteobacteria_55_8_curated
14_0929_02_40cm_scaffold_608_24
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24826..27120)
DNA (2295bp) protein (765aa)
hypothetical protein
hypothetical protein id=24575780 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_Deltaproteobacteria_50_11_curated
14_0929_02_40cm_scaffold_608_25
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27275..28000)
DNA (726bp) protein (242aa)
ribulose-5-phosphate 4-epimerase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE6C4
class II aldolase/adducin family protein
Tax=RBG_13_Deltaproteobacteria_47_9_curated
14_0929_02_40cm_scaffold_608_26
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

28053..29279
DNA (1227bp) protein (409aa)
Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01402}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01402};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01402};; Short=aPGAM {ECO:0000256|HAMAP-Rule:MF_01402};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01402};; TaxID=174633 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="Candidatus Kuenenia stuttgartiensis.;"
Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1J1_9BACT rbh
phosphonopyruvate decarboxylase-like protein
14_0929_02_40cm_scaffold_608_27
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(29306..30310)
DNA (1005bp) protein (335aa)
Luciferase-like monooxygenase id=4412867 bin=GWF2_Methylomirabilis_70_14 species=Rhodococcus triatomae genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Luciferase-like monooxygenase
Tax=GWC2_Rokubacteria_70_16_curated
14_0929_02_40cm_scaffold_608_28
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

30390..30782
DNA (393bp) protein (131aa)
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] id=14626336 bin=bin7_NC10_sister species=Aneurinibacillus aneurinilyticus genus=Aneurinibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA epimerase (EC:5.1.99.1)
Tax=CSP1_6_Rokubacteria
14_0929_02_40cm_scaffold_608_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

30789..31766
DNA (978bp) protein (326aa)
Acyl-CoA dehydrogenase domain protein id=4412860 bin=GWF2_Methylomirabilis_70_14 species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 29 items

View Taxonomy