ggKbase home page

14_0929_05_20cm_scaffold_71

Search features with annotation key words

Displaying items 1-30 of 110 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_05_20cm_scaffold_71_1
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

3..467
DNA (465bp) protein (155aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHX3_KORVE
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:ABF43527.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
14_0929_05_20cm_scaffold_71_2
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

593..1531
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHX4_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF43526.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
14_0929_05_20cm_scaffold_71_3
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

1786..2994
DNA (1209bp) protein (403aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01UK1_SOLUE
peptidase S7
Tax=RBG_16_Ignavibacteria_34_14_curated
14_0929_05_20cm_scaffold_71_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

2994..4202
DNA (1209bp) protein (403aa)
Pdz/Dhr/GlgF n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHX6_KORVE
hypothetical protein
Pdz/Dhr/GlgF {ECO:0000313|EMBL:ABF43524.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
14_0929_05_20cm_scaffold_71_5
unknown

Not on your lists

4463..4744
DNA (282bp) protein (94aa)

This feature has no annotations

14_0929_05_20cm_scaffold_71_6
unknown

Not on your lists

4873..5013
DNA (141bp) protein (47aa)

This feature has no annotations

14_0929_05_20cm_scaffold_71_7
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5132..6478)
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003602EE0
sugar transporter
Sugar transporter {ECO:0000313|EMBL:ABF40056.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
14_0929_05_20cm_scaffold_71_8
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

6815..8014
DNA (1200bp) protein (400aa)
Cystathionine gamma-synthase {ECO:0000313|EMBL:ABF40982.1}; EC=2.5.1.48 {ECO:0000313|EMBL:ABF40982.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003629B02 rbh
cystathionine gamma-synthase rbh
14_0929_05_20cm_scaffold_71_9
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8011..9183
DNA (1173bp) protein (391aa)
Cystathionine beta-lyase {ECO:0000313|EMBL:ABF40983.1}; EC=4.4.1.8 {ECO:0000313|EMBL:ABF40983.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Cystathionine beta-lyase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQ67_KORVE
cystathionine beta-lyase
14_0929_05_20cm_scaffold_71_10
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

9267..9920
DNA (654bp) protein (218aa)
UPI00034C17D1 related cluster n=1 Tax=unknown RepID=UPI00034C17D1
Ig domain-containing protein
Ig domain-containing protein {ECO:0000313|EMBL:AGK03597.1}; TaxID=504728 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21); (Thermus ruber).;"
14_0929_05_20cm_scaffold_71_11
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(9979..10578)
DNA (600bp) protein (200aa)
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33 4.2.1.35)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000313|EMBL:CCW36527.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZR4_9BACT
14_0929_05_20cm_scaffold_71_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10575..11993)
DNA (1419bp) protein (473aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
leuC; isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=LEUC_ACIC5
14_0929_05_20cm_scaffold_71_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12003..13106)
DNA (1104bp) protein (368aa)
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|SAAS:SAAS00089855}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|SAAS:SAAS00089855};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
3-isopropylmalate dehydrogenase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F701_ACIC5
14_0929_05_20cm_scaffold_71_14
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(13125..14327)
DNA (1203bp) protein (401aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
leuA; 2-isopropylmalate synthase (EC:2.3.3.13) rbh
2-isopropylmalate synthase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBS6_9BACT
14_0929_05_20cm_scaffold_71_15
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14472..15383
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B3517D
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADV81966.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
14_0929_05_20cm_scaffold_71_16
unknown

Not on your lists

15474..15623
DNA (150bp) protein (50aa)

This feature has no annotations

14_0929_05_20cm_scaffold_71_17
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15733..16248)
DNA (516bp) protein (172aa)
N-acetylglutamate synthase {ECO:0000313|EMBL:ABF43156.1}; EC=2.3.1.1 {ECO:0000313|EMBL:ABF43156.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
N-acetylglutamate synthase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIZ4_KORVE
N-acetylglutamate synthase
14_0929_05_20cm_scaffold_71_18
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(16235..17638)
DNA (1404bp) protein (468aa)
Argininosuccinate lyase n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V7T7_TERSS rbh
argininosuccinate lyase rbh
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
14_0929_05_20cm_scaffold_71_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(17635..18858)
DNA (1224bp) protein (408aa)
Argininosuccinate synthase {ECO:0000255|HAMAP-Rule:MF_00005}; EC=6.3.4.5 {ECO:0000255|HAMAP-Rule:MF_00005};; Citrulline--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00005}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Argininosuccinate synthase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=ASSY_KORVE rbh
argininosuccinate synthase rbh
14_0929_05_20cm_scaffold_71_20
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(18851..19837)
DNA (987bp) protein (329aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Ornithine carbamoyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIZ1_KORVE rbh
ornithine carbamoyltransferase rbh
14_0929_05_20cm_scaffold_71_21

Not on your lists

comp(19873..21150)
DNA (1278bp) protein (426aa)
Acetylornithine aminotransferase {ECO:0000313|EMBL:CBI00485.1}; EC=2.6.1.11 {ECO:0000313|EMBL:CBI00485.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
argD; acetylornithine transaminase (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=mine drainage metagenome RepID=E6PZX6_9ZZZZ
14_0929_05_20cm_scaffold_71_22
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(21147..21935)
DNA (789bp) protein (263aa)
argB; acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000255|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000255|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000255|HAMAP-Rule:MF_00082}; Short=AGK {ECO:0000255|HAMAP-Rule:MF_00082};; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
acetylglutamate kinase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B43EAB
14_0929_05_20cm_scaffold_71_23
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(21932..22969)
DNA (1038bp) protein (346aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIY9_KORVE
N-acetyl-gamma-glutamyl-phosphate reductase
14_0929_05_20cm_scaffold_71_24
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(22969..23409)
DNA (441bp) protein (147aa)
Arginine repressor n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=ARGR_KORVE
ArgR family transcriptional regulator
Arginine repressor {ECO:0000255|HAMAP-Rule:MF_00173}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
14_0929_05_20cm_scaffold_71_25
unknown

Not on your lists

23605..24048
DNA (444bp) protein (148aa)

This feature has no annotations

14_0929_05_20cm_scaffold_71_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

24323..24970
DNA (648bp) protein (216aa)
lepB; LepB protein (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=24578640 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
signal peptidase I
Tax=RBG_16_RIF_WS3X_71_46_curated
14_0929_05_20cm_scaffold_71_27
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

25020..26078
DNA (1059bp) protein (353aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM88_KORVE
phosphoribosylformylglycinamidine cyclo-ligase
14_0929_05_20cm_scaffold_71_28
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

26295..26924
DNA (630bp) protein (210aa)
purN; phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
Phosphoribosylglycinamide formyltransferase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F5W8_ACIC5
14_0929_05_20cm_scaffold_71_29
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(27187..27702)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003620666
CBS domain-containing protein
CBS domain containing protein {ECO:0000313|EMBL:ABJ88793.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
14_0929_05_20cm_scaffold_71_30
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(27800..28783)
DNA (984bp) protein (328aa)
CBS domain containing protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NH7_SOLUE
CBS domain-containing protein
CBS domain containing protein {ECO:0000313|EMBL:ABJ88793.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Displaying items 1-30 of 110 in total

View Taxonomy