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14_0929_05_30cm_scaffold_3094

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Displaying 15 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_05_30cm_scaffold_3094_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3..254
DNA (252bp) protein (84aa)
Elongation factor Tu id=1776813 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tufB; Elongation factor Tu (EF-Tu)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_30cm_scaffold_3094_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


258..407
DNA (150bp) protein (50aa)
50S ribosomal protein L33 id=3836408 bin=GWF2_Methylomirabilis_70_14 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmG; 50S ribosomal protein L33
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_3094_trna_1
unknown

Not on your lists

677..750
DNA (74bp)
transferRNA Trp
14_0929_05_30cm_scaffold_3094_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

776..967
DNA (192bp) protein (64aa)
Preprotein translocase, SecE subunit id=3836410 bin=GWF2_Methylomirabilis_70_14 species=Ruminococcus albus genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
preprotein translocase subunit SecE
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_30cm_scaffold_3094_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

964..1518
DNA (555bp) protein (185aa)
Transcription antitermination protein nusG id=3836412 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nusG; component in transcription antitermination
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_30cm_scaffold_3094_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


1515..1934
DNA (420bp) protein (140aa)
50S ribosomal protein L11 id=3447240 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplK; 50S ribosomal protein L11
Tax=GWA2_Rokubacteria_70_23_curated
14_0929_05_30cm_scaffold_3094_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


1980..2708
DNA (729bp) protein (243aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 id=14627335 bin=bin7_NC10_sister species=Bacillus sp. ZYK genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplA; 50S ribosomal protein L1 rbh
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_3094_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


2724..3263
DNA (540bp) protein (180aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=14627334 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplJ; 50S ribosomal protein L10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_3094_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


3279..3665
DNA (387bp) protein (129aa)
50S ribosomal protein L7/L12 id=3447250 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplL; 50S ribosomal protein L7/L12
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_3094_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3735..7745
DNA (4011bp) protein (1337aa)
rpoB; RNA polymerase subunit beta (EC:2.7.7.6) id=14627332 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoB; RNA polymerase subunit beta (EC:2.7.7.6)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_3094_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7779..11972
DNA (4194bp) protein (1398aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) id=14627331 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_3094_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


12057..12440
DNA (384bp) protein (128aa)
30S ribosomal protein S12 id=3836486 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsL; 30S ribosomal protein S12
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_3094_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


12444..12911
DNA (468bp) protein (156aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 id=14627329 bin=bin7_NC10_sister species=Photobacterium profundum genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S7
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_3094_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12995..15106
DNA (2112bp) protein (704aa)
Elongation factor G id=1776811 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fusA-3; elongation factor G
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_30cm_scaffold_3094_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists


15129..15326
DNA (198bp) protein (66aa)
translation elongation factor 1A (EF-1A/EF-Tu); K02358 elongation factor Tu id=14625511 bin=bin7_NC10_sister species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
tuf; elongation factor Tu
Tax=CSP1_6_Rokubacteria
Displaying 15 items

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