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14_0929_05_30cm_scaffold_10003

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_05_30cm_scaffold_10003_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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2..784
DNA (783bp) protein (261aa)
Type IV pilus biogenesis protein PilC id=4331114 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pilC; type 4 fimbrial assembly protein pilC
Tax=GWC2_Rokubacteria_70_16_curated
14_0929_05_30cm_scaffold_10003_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

781..2214
DNA (1434bp) protein (478aa)
sensory histidine kinase AtoS (EC:2.7.13.3)
Signal transduction histidine kinase, nitrogen specific, NtrB id=4082171 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
14_0929_05_30cm_scaffold_10003_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2207..3673
DNA (1467bp) protein (489aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4331079 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
NtrC family two-component response regulator
Tax=GWC2_Rokubacteria_70_16_curated
14_0929_05_30cm_scaffold_10003_4
unknown

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3716..4048
DNA (333bp) protein (111aa)

This feature has no annotations

14_0929_05_30cm_scaffold_10003_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(4001..4768)
DNA (768bp) protein (256aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter sp. (strain M18) RepID=E8WPG5_GEOS8
LuxR family two component transcriptional regulator
Tax=RBG_16_Gemmatimonadetes_66_8_curated
14_0929_05_30cm_scaffold_10003_6
unknown

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4999..5415
DNA (417bp) protein (139aa)

This feature has no annotations

14_0929_05_30cm_scaffold_10003_7
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5445..6008
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI00036E78A6
acetyltransferase (isoleucine patch superfamily)-like protein
Tax=RBG_16_Desulfobacca_60_12_curated
14_0929_05_30cm_scaffold_10003_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6020..6889)
DNA (870bp) protein (290aa)
nadE; NAD synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
NH(3)-dependent NAD(+) synthetase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07U47_RHOP5
14_0929_05_30cm_scaffold_10003_9
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7003..8538)
DNA (1536bp) protein (512aa)
AMP-dependent synthetase and ligase id=4972203 bin=GWA2_OP3_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Putative long-chain fatty-acid-CoA ligase protein {ECO:0000313|EMBL:EDL57062.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
AMP-dependent synthetase and ligase
14_0929_05_30cm_scaffold_10003_10
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(8550..8807)
DNA (258bp) protein (86aa)
Acyl carrier protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UZE9_ROSS1
hypothetical protein
Tax=RBG_16_Planctomycetes_64_10_curated
14_0929_05_30cm_scaffold_10003_11
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(8794..10749)
DNA (1956bp) protein (652aa)
Asparagine synthetase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CE28_9PLAN
asparagine synthase
Tax=RBG_13_Planctomycetes_63_9_curated
14_0929_05_30cm_scaffold_10003_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10935..11639)
DNA (705bp) protein (235aa)
N-acetylmuramic acid 6-phosphate etherase id=3431007 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glucokinase regulatory-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_10003_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11733..12824
DNA (1092bp) protein (364aa)
Uncharacterised conserved protein UCP016719 id=4143370 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 13 items

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