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14_0929_05_30cm_scaffold_4142

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_05_30cm_scaffold_4142_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..1004)
DNA (1002bp) protein (334aa)
Endonuclease/exonuclease/phosphatase id=3733094 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type I phosphodiesterase/nucleotide pyrophosphatase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_4142_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1045..3243
DNA (2199bp) protein (733aa)
isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Acyl-CoA dehydrogenase id=3733092 bin=GWA2_Methylomirabilis_73_35 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
14_0929_05_30cm_scaffold_4142_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3291..4583
DNA (1293bp) protein (431aa)
Acyl-CoA dehydrogenase id=3733084 bin=GWA2_Methylomirabilis_73_35 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_30cm_scaffold_4142_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4591..4878
DNA (288bp) protein (96aa)
ATP-dependent Clp protease adaptor protein ClpS id=3733080 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
clpS; ATP-dependent Clp protease adaptor protein clpS
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_4142_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4908..6452)
DNA (1545bp) protein (515aa)
Altronate dehydratase (EC:4.2.1.7)
D-galactarate dehydratase/altronate hydrolase-like protein id=2696008 bin=GWC2_Methylomirabilis_70_16 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_4142_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6472..7377)
DNA (906bp) protein (302aa)
Cobalt-zinc-cadmium resistance protein CzcD id=2973321 bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
czcD; cation efflux system protein czcD
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_4142_7
unknown

Not on your lists

comp(7386..7970)
DNA (585bp) protein (195aa)

This feature has no annotations

14_0929_05_30cm_scaffold_4142_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8032..8865
DNA (834bp) protein (278aa)
alpha/beta hydrolase fold protein id=14627593 bin=bin7_NC10_sister species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_4142_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8862..9503)
DNA (642bp) protein (214aa)
Molybdopterin binding protein id=3831000 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium F25-01 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_30cm_scaffold_4142_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9666..10433
DNA (768bp) protein (256aa)
hypothetical protein id=14627875 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_4142_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(10430..10795)
DNA (366bp) protein (122aa)
hypothetical protein id=14625221 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
14_0929_05_30cm_scaffold_4142_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10795..11253)
DNA (459bp) protein (153aa)
DoxX family protein id=3830283 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_05_30cm_scaffold_4142_13
unknown

Not on your lists

11322..11531
DNA (210bp) protein (70aa)

This feature has no annotations

14_0929_05_30cm_scaffold_4142_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11625..11966
DNA (342bp) protein (114aa)
Periplasmic thiol:disulfide interchange protein DsbA id=3830285 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DSBA oxidoreductase
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_30cm_scaffold_4142_15
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11966..12274
DNA (309bp) protein (103aa)
dioxygenase, ferredoxin subunit id=14626247 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase
Tax=RBG_13_Deltaproteobacteria_65_10_curated
14_0929_05_30cm_scaffold_4142_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12395..12748
DNA (354bp) protein (118aa)
transcriptional regulator y4dJ id=3830287 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator y4dJ
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_05_30cm_scaffold_4142_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12825..13106
DNA (282bp) protein (94aa)
Putative membrane protein id=3830370 bin=GWA2_Methylomirabilis_73_35 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipid A biosynthesis domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_30cm_scaffold_4142_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13259..14473
DNA (1215bp) protein (405aa)
serine--pyruvate transaminase (EC:2.6.1.51)
Serine--pyruvate transaminase id=3830371 bin=GWA2_Methylomirabilis_73_35 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_05_30cm_scaffold_4142_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14482..14871
DNA (390bp) protein (130aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=3830925 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 19 items

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