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14_0929_12_30cm_scaffold_471

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Displaying items 1-30 of 51 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_12_30cm_scaffold_471_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24..617
DNA (594bp) protein (198aa)
Hypothetical membrane protein id=3950581 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_471_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(740..1642)
DNA (903bp) protein (301aa)
ABC transporter permease; K02034 peptide/nickel transport system permease protein id=14627053 bin=bin7_NC10_sister species=Brevibacillus brevis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
binding-protein-dependent transporters inner membrane component
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_471_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1829..2746)
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dppB; dipeptide transport system permease DppB
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_471_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2743..4266)
DNA (1524bp) protein (508aa)
RNA methyltransferase, trma family protein id=4948663 bin=GWC2_Methylomirabilis_70_24 species=Paenibacillus peoriae genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
RNA methyltransferase
Tax=GWA2_Rokubacteria_70_23_curated
14_0929_12_30cm_scaffold_471_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4319..4789
DNA (471bp) protein (157aa)
Uncharacterized protein id=4526375 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_471_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4786..6531
DNA (1746bp) protein (582aa)
Tetratricopeptide repeat family protein id=4526378 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_471_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6548..7264
DNA (717bp) protein (239aa)
Uncharacterized protein id=4526381 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_471_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7280..8197
DNA (918bp) protein (306aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=3716360 bin=GWF2_Methylomirabilis_70_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_471_trna_1
unknown

Not on your lists

8212..8290
DNA (79bp)
transferRNA Gln
14_0929_12_30cm_scaffold_471_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8306..9244
DNA (939bp) protein (313aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=4526388 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_471_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


9267..9983
DNA (717bp) protein (239aa)
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 id=14627044 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_471_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9999..10523
DNA (525bp) protein (175aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=4785576 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_471_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10543..11787)
DNA (1245bp) protein (415aa)
Transporter, UIT6 family id=4785574 bin=GWA2_Methylomirabilis_73_35 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_471_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11918..12112
DNA (195bp) protein (65aa)
30S ribosomal protein S21 id=4785572 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S21
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_471_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12202..14361
DNA (2160bp) protein (720aa)
MutS2 protein id=3357842 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
MutS2 protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_471_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14416..16290
DNA (1875bp) protein (625aa)
DNA primase id=4785564 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
DNA primase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_471_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

16283..18133
DNA (1851bp) protein (617aa)
RNA polymerase sigma factor RpoD id=3357851 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNA polymerase sigma factor RpoD
Tax=GWC2_Rokubacteria_70_16_curated
14_0929_12_30cm_scaffold_471_trna_2
unknown

Not on your lists

18153..18224
DNA (72bp)
transferRNA Met
14_0929_12_30cm_scaffold_471_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18493..19206
DNA (714bp) protein (238aa)
hypothetical protein id=14627037 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
14_0929_12_30cm_scaffold_471_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19368..19667
DNA (300bp) protein (100aa)
Ribonuclease H id=4704588 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ribonuclease H
Tax=GWC2_Rokubacteria_70_16_curated
14_0929_12_30cm_scaffold_471_19
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19679..20623
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI0003669DC0
ECF subfamily RNA polymerase sigma-24 factor
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:AJY76664.1}; TaxID=1126833 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus beijingensis.;"
14_0929_12_30cm_scaffold_471_20
unknown

Not on your lists

21454..21582
DNA (129bp) protein (43aa)

This feature has no annotations

14_0929_12_30cm_scaffold_471_21
RHI_OD1_Uhrbacteria_60_25, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

21579..21833
DNA (255bp) protein (85aa)
GIY-YIG catalytic domain protein n=1 Tax=Anaerococcus prevotii ACS-065-V-Col13 RepID=F0GVN7_9FIRM
excinuclease ABC C subunit domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_OD1_Uhrbacteria_60_25_curated
14_0929_12_30cm_scaffold_471_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22423..22842
DNA (420bp) protein (140aa)
id=14626280 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_471_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22988..24172)
DNA (1185bp) protein (395aa)
Bll6906 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89EZ5_BRADU
isomerase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_471_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24545..25498)
DNA (954bp) protein (318aa)
Import inner membrane translocase, subunit Tim44 id=4379998 bin=GWA2_Methylomirabilis_73_35 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
import inner membrane translocase subunit Tim44
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_471_25
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

25653..26951
DNA (1299bp) protein (433aa)
Extracellular solute-binding protein family 1 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ82_STAND
family 1 extracellular solute-binding protein
Tax=RBG_16_NC10_65_8_curated
14_0929_12_30cm_scaffold_471_26
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

27017..27871
DNA (855bp) protein (285aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ81_STAND
binding-protein-dependent transporters inner membrane component
Tax=RBG_16_NC10_65_8_curated
14_0929_12_30cm_scaffold_471_27
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

27868..28692
DNA (825bp) protein (275aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ80_STAND
binding-protein-dependent transporters inner membrane component
Tax=RBG_16_NC10_65_8_curated
14_0929_12_30cm_scaffold_471_28
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

28879..29310
DNA (432bp) protein (144aa)
UspA domain-containing protein id=14625462 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
UspA domain-containing protein
Tax=CSP1_6_Rokubacteria
Displaying items 1-30 of 51 in total

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