ggKbase home page

14_0929_12_30cm_scaffold_3022

Search features with annotation key words

Displaying 14 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_12_30cm_scaffold_3022_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..864
DNA (864bp) protein (288aa)
60 kDa chaperonin id=2197767 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
groL; chaperonin GroEL , truncated
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_3022_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1114..1431
DNA (318bp) protein (106aa)
30S ribosomal protein S6 id=2197766 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsF; 30S ribosomal protein S6
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_3022_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1431..1844
DNA (414bp) protein (138aa)
Single-stranded DNA-binding protein id=2197765 bin=GWA2_Methylomirabilis_73_35 species=Methylacidiphilum infernorum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ssb; Single-stranded DNA-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_3022_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1920..2117
DNA (198bp) protein (66aa)
rpsR; 30S ribosomal protein S18 id=14428826 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rpsR; 30S ribosomal protein S18
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_3022_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


2128..2571
DNA (444bp) protein (148aa)
50S ribosomal protein L9 id=2197764 bin=GWA2_Methylomirabilis_73_35 species=Desulfosporosinus sp. OT genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L9
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_3022_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2790..5207
DNA (2418bp) protein (806aa)
dnaB; replicative DNA helicase (EC:3.6.4.12)
Replicative DNA helicase id=2197763 bin=GWA2_Methylomirabilis_73_35 species=Allochromatium vinosum genus=Allochromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_3022_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5241..7061
DNA (1821bp) protein (607aa)
Amino acid permease-associated region id=2197762 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_3022_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7190..8110
DNA (921bp) protein (307aa)
DNA-3-methyladenine glycosylase II (EC:3.2.2.21)
DNA-3-methyladenine glycosylase II id=2197712 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_3022_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8107..8433
DNA (327bp) protein (109aa)
Putative uncharacterized protein id=2197711 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_3022_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8433..9833
DNA (1401bp) protein (467aa)
EmrB/QacA family drug resistance transporter id=2197710 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
EmrB/QacA family drug resistance transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_3022_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9837..10343
DNA (507bp) protein (169aa)
hypothetical protein id=2197709 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_3022_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10366..10551
DNA (186bp) protein (62aa)
Alkylhydroperoxidase like protein, AhpD family id=2197708 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_3022_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10716..11111
DNA (396bp) protein (132aa)
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein id=14627149 bin=bin7_NC10_sister species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
14_0929_12_30cm_scaffold_3022_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11135..12100
DNA (966bp) protein (322aa)
ABC transporter related id=2197706 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 14 items

View Taxonomy