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14_0929_12_40cm_scaffold_642

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_12_40cm_scaffold_642_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..778
DNA (777bp) protein (259aa)
glycosyl hydrolase family protein id=5080733 bin=GWF1_Burkholderiales_GWF1_66_17 species=Cupriavidus pinatubonensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
glycosyl hydrolase family protein
Tax=GWE1_Burkholderiales_65_30_curated
14_0929_12_40cm_scaffold_642_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

788..1777
DNA (990bp) protein (330aa)
Luciferase family protein id=4478147 bin=GWC2_Methylomirabilis_70_24 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Luciferase-like, subgroup
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1965..2936
DNA (972bp) protein (324aa)
Putative uncharacterized protein id=2773068 bin=GWA2_Methylomirabilis_73_35 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dihydroorotate dehydrogenase
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_40cm_scaffold_642_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3051..3818)
DNA (768bp) protein (256aa)
ABC transporter-like protein id=2817364 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3815..4813)
DNA (999bp) protein (333aa)
Membrane lipoprotein lipid attachment site id=2817368 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
membrane lipoprotein lipid attachment site
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_40cm_scaffold_642_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4810..5472)
DNA (663bp) protein (221aa)
Abc transporter permease protein id=4165886 bin=GWF2_Methylomirabilis_70_14 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5560..6564
DNA (1005bp) protein (335aa)
Putative uncharacterized protein id=2817611 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_40cm_scaffold_642_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6561..7787
DNA (1227bp) protein (409aa)
Threonine synthase ThrC id=4165888 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
threonine synthase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_40cm_scaffold_642_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7903..8427
DNA (525bp) protein (175aa)
Putative 3-methyladenine DNA glycosylase id=2773084 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-3-methyladenine glycosylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_10
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8294..8845)
DNA (552bp) protein (184aa)
acetyltransferase n=1 Tax=Paenibacillus elgii RepID=UPI000248D8BF
Uncharacterized protein {ECO:0000313|EMBL:KHL05682.1}; TaxID=1338436 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
hypothetical protein
14_0929_12_40cm_scaffold_642_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8889..9638)
DNA (750bp) protein (250aa)
hypothetical protein id=2773093 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9756..10484
DNA (729bp) protein (243aa)
tolQ protein; K03562 biopolymer transport protein TolQ id=14626725 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
flagellar motor protein MotA
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_40cm_scaffold_642_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10474..10902
DNA (429bp) protein (143aa)
tolR; protein TolR; K03560 biopolymer transport protein TolR id=14626726 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
exbD; Biopolymer transport protein exbD
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10904..11755
DNA (852bp) protein (284aa)
TonB family protein id=4034141 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative periplasmic protein TonB
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11760..13097
DNA (1338bp) protein (446aa)
WD40 domain-containing protein; K03641 TolB protein id=14626728 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
biopolymer transport periplasmic beta-propeller repeat protein, TolB-related
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13150..13731
DNA (582bp) protein (194aa)
OmpA/MotB domain protein id=4034147 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidoglycan-associated lipoprotein
Tax=CSP1_6_Rokubacteria
14_0929_12_40cm_scaffold_642_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13743..14603
DNA (861bp) protein (287aa)
Tol-Pal system YbgF id=14626730 bin=bin7_NC10_sister species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
14_0929_12_40cm_scaffold_642_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14605..15078)
DNA (474bp) protein (158aa)
hypothetical protein id=4034151 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15125..15754
DNA (630bp) protein (210aa)
Alpha/beta hydrolase family protein id=4034153 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_40cm_scaffold_642_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15751..16344)
DNA (594bp) protein (198aa)
hypothetical protein id=14626734 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_40cm_scaffold_642_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16360..17085
DNA (726bp) protein (242aa)
Short-chain dehydrogenase/reductase SDR id=4034156 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_22
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(17320..18927)
DNA (1608bp) protein (536aa)
phosphoenolpyruvate mutase (EC:5.4.2.9)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI0003104DAD
Tax=RBG_13_Aminicenantes_62_12_curated
14_0929_12_40cm_scaffold_642_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18928..20061)
DNA (1134bp) protein (378aa)
phosphonopyruvate decarboxylase (EC:4.1.1.82)
Phosphoenolpyruvate mutase id=4268408 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_40cm_scaffold_642_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20069..20770)
DNA (702bp) protein (234aa)
Beta-lactamase-like id=4034158 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Beta-lactamase-like
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_25
unknown

Not on your lists

comp(20826..21104)
DNA (279bp) protein (93aa)

This feature has no annotations

14_0929_12_40cm_scaffold_642_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21120..22883)
DNA (1764bp) protein (588aa)
hypothetical protein id=14626738 bin=bin7_NC10_sister species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_40cm_scaffold_642_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22891..24426)
DNA (1536bp) protein (512aa)
Putative ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like id=4034167 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gliding motility ABC transporter auxillary protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_40cm_scaffold_642_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24431..25195)
DNA (765bp) protein (255aa)
ABC-type transport system involved in multi-copper enzyme maturation, permease component id=4830679 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
multi-copper enzyme maturation ABC transporter permease
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_40cm_scaffold_642_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25192..26136)
DNA (945bp) protein (315aa)
ABC transporter id=14626741 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ABC transporter
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_40cm_scaffold_642_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26152..26571)
DNA (420bp) protein (140aa)
Putative uncharacterized protein id=4830683 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
4-hydroxybenzoyl-CoA thioesterase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying items 1-30 of 34 in total

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