ggKbase home page

14_1009_16_40cm_scaffold_56502

Search features with annotation key words

Displaying 11 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_1009_16_40cm_scaffold_56502_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2..1072
DNA (1071bp) protein (357aa)
NAD+ synthetase {ECO:0000313|EMBL:EEF62034.1}; EC=6.3.5.1 {ECO:0000313|EMBL:EEF62034.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
NAD+ synthetase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD88_9BACT
NH(3)-dependent NAD(+) synthetase
14_1009_16_40cm_scaffold_56502_2
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(1117..1683)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AR46_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EIP97487.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hypothetical protein
14_1009_16_40cm_scaffold_56502_3
unknown

Not on your lists

comp(2009..2194)
DNA (186bp) protein (62aa)

This feature has no annotations

14_1009_16_40cm_scaffold_56502_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2432..3307
DNA (876bp) protein (292aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD98_9BACT
glutamate-1-semialdehyde-2,1-aminomutase
14_1009_16_40cm_scaffold_56502_5
unknown

Not on your lists

3322..3417
DNA (96bp) protein (32aa)

This feature has no annotations

14_1009_16_40cm_scaffold_56502_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3424..3837
DNA (414bp) protein (138aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Putative Holliday junction resolvase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDA0_9BACT
rnhD; RNase H-like ribonuclease
14_1009_16_40cm_scaffold_56502_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3936..4769
DNA (834bp) protein (278aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tRNA pseudouridine synthase A (EC:4.2.1.70)
tRNA pseudouridine synthase A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDA1_9BACT
14_1009_16_40cm_scaffold_56502_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4813..5286
DNA (474bp) protein (158aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDA2_9BACT
TrmH family RNA methyltransferase
14_1009_16_40cm_scaffold_56502_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5405..5896)
DNA (492bp) protein (164aa)
PTS system transporter subunit IIA (EC:2.7.1.69)
Putative PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDA3_9BACT
Putative PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:EEF62049.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
14_1009_16_40cm_scaffold_56502_10
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6224..8092)
DNA (1869bp) protein (623aa)
High-affnity carbon uptake protein Hat/HatR n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QRF9_9DELT
High-affnity carbon uptake protein Hat/HatR {ECO:0000313|EMBL:EPX59188.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
WD40 repeat-containing protein
14_1009_16_40cm_scaffold_56502_11
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8089..8586)
DNA (498bp) protein (166aa)
WD-40 repeat containing protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FYB2_STIAD
wd-40 repeat containing protein
WD-40 repeat {ECO:0000313|EMBL:EAU62543.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
Displaying 11 items

View Taxonomy