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14_1009_16_40cm_scaffold_1729

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_1009_16_40cm_scaffold_1729_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..256)
DNA (255bp) protein (85aa)
Twitching motility protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITU1_KORVE
twitching motility protein
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(316..1287)
DNA (972bp) protein (324aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] id=17061522 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate rbh
branched-chain amino acid aminotransferase
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1440..2348)
DNA (909bp) protein (303aa)
serine/threonine protein kinase id=16868264 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
serine/threonine protein kinase with PASTA sensor(s)
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_4
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2357..3514
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUC8_CLOCD rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS23352.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein rbh
14_1009_16_40cm_scaffold_1729_5
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3594..6845)
DNA (3252bp) protein (1084aa)
Spermine/spermidine synthase family protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UB74_MYXSD
spermine/spermidine synthase family protein
Spermine/spermidine synthase family protein {ECO:0000313|EMBL:AGC45125.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
14_1009_16_40cm_scaffold_1729_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6842..7585)
DNA (744bp) protein (248aa)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Thauera phenylacetica B4P RepID=N6ZRN5_9RHOO
16S ribosomal RNA methyltransferase RsmE
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7582..8397)
DNA (816bp) protein (272aa)
prmA; 50S ribosomal protein L11 methyltransferase (EC:2.1.1.-); K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] id=14623841 bin=bin5_DeltaP species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
50S ribosomal protein L20 (EC:2.1.1.-)
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8418..9533)
DNA (1116bp) protein (372aa)
Chaperone protein DnaJ n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILK7_KORVE
molecular chaperone DnaJ
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9568..11370)
DNA (1803bp) protein (601aa)
Chaperone protein DnaK n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ61_CHLTF
chaperone protein DnaK
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11422..12039)
DNA (618bp) protein (206aa)
Protein GrpE n=2 Tax=Stenotrophomonas maltophilia RepID=GRPE_STRM5
heat shock protein GrpE
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12036..13082)
DNA (1047bp) protein (349aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ59_CHLTF
heat shock gene repressor HrcA
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13291..14403)
DNA (1113bp) protein (371aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ald; alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SIT8_9BACT
14_1009_16_40cm_scaffold_1729_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14414..15865)
DNA (1452bp) protein (484aa)
Aldehyde dehydrogenase id=1250029 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
aldehyde dehydrogenase
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(15960..16409)
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D3H2_MYXXD
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_trna_1
unknown

Not on your lists

comp(16843..16915)
DNA (73bp)
transferRNA Gly
14_1009_16_40cm_scaffold_1729_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(17001..18350)
DNA (1350bp) protein (450aa)
phosphomannomutase; K01840 phosphomannomutase [EC:5.4.2.8] id=12556988 bin=CNBR_ACIDO species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphomannomutase (EC:5.4.2.8)
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(18367..19455)
DNA (1089bp) protein (363aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] id=12556989 bin=CNBR_ACIDO species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleotidyl transferase
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

19475..20107
DNA (633bp) protein (211aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00038269AA
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20113..21249)
DNA (1137bp) protein (379aa)
Peptidoglycan-binding lysin domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NVQ3_9BACT
peptidoglycan-binding LysM
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21426..22292)
DNA (867bp) protein (289aa)
outer membrane assembly lipoprotein YfiO; K05807 putative lipoprotein id=12556991 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tetratricopeptide TPR_2
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(22289..23227)
DNA (939bp) protein (313aa)
NDP-sugar oxidoreductase id=12556992 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
NDP-sugar oxidoreductase
Tax=RBG_16_Acidobacteria_70_10_curated
14_1009_16_40cm_scaffold_1729_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(23224..23622)
DNA (399bp) protein (133aa)
Thioesterase superfamily protein n=3 Tax=Anaeromyxobacter RepID=B4UDN2_ANASK id=5225272 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
14_1009_16_40cm_scaffold_1729_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(23619..24269)
DNA (651bp) protein (217aa)
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000371C966
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
14_1009_16_40cm_scaffold_1729_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(24266..25003)
DNA (738bp) protein (246aa)
PASTA domain-containing protein id=24423482 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
protein PASTA domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
14_1009_16_40cm_scaffold_1729_24
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25114..26445)
DNA (1332bp) protein (444aa)
Sun protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E3P1_GEOLS
sun protein
Tax=CG_Delta_03
14_1009_16_40cm_scaffold_1729_25
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(26450..27376)
DNA (927bp) protein (309aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000255|HAMAP-Rule:MF_00182}; EC=2.1.2.9 {ECO:0000255|HAMAP-Rule:MF_00182};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Methionyl-tRNA formyltransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=FMT_SOLUE
14_1009_16_40cm_scaffold_1729_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(27380..27862)
DNA (483bp) protein (161aa)
formylmethionine deformylase (EC:3.5.1.88)
peptide deformylase id=12556999 bin=CNBR_ACIDO species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
14_1009_16_40cm_scaffold_1729_27
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

27952..29445
DNA (1494bp) protein (498aa)
BNR/Asp-box repeat protein id=4751204 bin=GWC2_Ignavibacteria_38_9 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
14_1009_16_40cm_scaffold_1729_28
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29583..30761)
DNA (1179bp) protein (393aa)
aroC; chorismate synthase AroC (EC:4.2.3.5) rbh
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
Chorismate synthase n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LV23_THEPS rbh
14_1009_16_40cm_scaffold_1729_29
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

31266..33896
DNA (2631bp) protein (877aa)
Fis family NifA subfamily transcriptional regulator; K02584 Nif-specific regulatory protein id=16822981 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
sigma-54 dependent transcription regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Displaying items 1-30 of 31 in total

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