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2013_40cm_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 307 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2013_40cm_scaffold_4_1
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..1962)
DNA (1962bp) protein (654aa)
PKD domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
Cell wall surface anchor family protein id=1850634 bin=GWE2_Bacteroidetes_42_42 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
PKD domain-containing protein
2013_40cm_scaffold_4_2
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(2028..5276)
DNA (3249bp) protein (1083aa)
Putative uncharacterized protein id=4025616 bin=GWF2_Bacteroidetes_41_31 species=Flavobacterium psychrophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
2013_40cm_scaffold_4_3
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists

5531..7432
DNA (1902bp) protein (634aa)
amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14] Tax=CG_Bacteroid_01
Glutamine phosphoribosylpyrophosphate amidotransferase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KY33_SOLCM
glutamine phosphoribosylpyrophosphate amidotransferase
2013_40cm_scaffold_4_4
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7546..8694
DNA (1149bp) protein (383aa)
ABC transporter permease n=1 Tax=Pedobacter agri RepID=UPI00029A03AC
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter
ABC transporter
2013_40cm_scaffold_4_5
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists

8780..9649
DNA (870bp) protein (290aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R6B2_OWEHD
metalloendopeptidase-like membrane protein Tax=CG_Bacteroid_01
metalloendopeptidase-like membrane protein
2013_40cm_scaffold_4_6
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9667..11163
DNA (1497bp) protein (499aa)
Putative auxin-regulated protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JUS5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KEQ29384.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antar
GH3 auxin-responsive promoter
2013_40cm_scaffold_4_7
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

11235..12389
DNA (1155bp) protein (385aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Spirosoma panaciterrae RepID=UPI00035CAB13
1-deoxy-D-xylulose 5-phosphate reductoisomerase
2013_40cm_scaffold_4_8
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12482..13798
DNA (1317bp) protein (439aa)
RIP metalloprotease RseP Tax=GWF2_Bacteroidetes_35_48_curated
RIP metalloprotease RseP id=3845658 bin=GWF2_Bacteroidetes_38_335 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
RIP metalloprotease RseP
2013_40cm_scaffold_4_9
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13853..14605
DNA (753bp) protein (251aa)
Peptidoglycan-binding protein n=1 Tax=Pontibacter sp. BAB1700 RepID=J0V985_9BACT
Uncharacterized protein {ECO:0000313|EMBL:GAL82788.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
peptidoglycan-binding protein
2013_40cm_scaffold_4_10
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

14684..17047
DNA (2364bp) protein (788aa)
hypothetical protein; K07003 Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
Putative uncharacterized protein id=4128374 bin=GWF2_Bacteroidetes_38_335 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
hypothetical protein
2013_40cm_scaffold_4_11
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

17072..17935
DNA (864bp) protein (288aa)
glucose-1-phosphate thymidylyltransferase; K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FN46_FLAJ1
glucose-1-phosphate thymidylyltransferase
2013_40cm_scaffold_4_12
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

18015..18956
DNA (942bp) protein (314aa)
UDP-glucuronate decarboxylase (EC:4.1.1.35) Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
UDP-glucuronate decarboxylase (EC:4.1.1.35)
UDP-glucuronate decarboxylase id=4190321 bin=GWF2_Bacteroidetes_33_38 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
2013_40cm_scaffold_4_13
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18931..19938
DNA (1008bp) protein (336aa)
Polyprenyl synthetase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SDR5_PEDSD
polyprenyl synthetase
Polyprenyl synthetase {ECO:0000313|EMBL:ADY51811.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobac
2013_40cm_scaffold_4_14
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(19939..20622)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11VJ1_CYTH3
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
hypothetical protein
2013_40cm_scaffold_4_15
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(20715..22466)
DNA (1752bp) protein (584aa)
DNA polymerase III subunits gamma and tau Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
DNA polymerase III, tau subunit id=3625805 bin=GWF2_Bacteroidetes_35_48 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
DNA polymerase III subunits gamma/tau
2013_40cm_scaffold_4_16
unknown

Not on your lists

comp(22574..23548)
DNA (975bp) protein (325aa)

This feature has no annotations

2013_40cm_scaffold_4_17
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23761..26799
DNA (3039bp) protein (1013aa)
hypothetical protein Tax=GWA2_Bacteroidetes_31_9_curated
TPR-domain containing protein (Fragment) id=1789988 bin=GWB2_Bacteroidetes_32_14 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47
hypothetical protein
2013_40cm_scaffold_4_18
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26796..28496
DNA (1701bp) protein (567aa)
hypothetical protein AnHS1_11502 id=4339482 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
TonB dependent receptor Tax=GWA2_Bacteroidetes_32_17_curated
hypothetical protein
2013_40cm_scaffold_4_19
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(28573..30477)
DNA (1905bp) protein (635aa)
hypothetical protein n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B6F608
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
2013_40cm_scaffold_4_20
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(30602..32026)
DNA (1425bp) protein (475aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
Pyruvate kinase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XX75_PEDHD
pyruvate kinase
2013_40cm_scaffold_4_21
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32105..32527)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00036F7E22
Uncharacterized protein {ECO:0000313|EMBL:KJS06749.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
hypothetical protein
2013_40cm_scaffold_4_22
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32675..33436)
DNA (762bp) protein (254aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
Ribonuclease 3 n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KX80_SOLCM
ribonuclease III
2013_40cm_scaffold_4_23
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33522..34772)
DNA (1251bp) protein (417aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobact
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7P2_PEDSD
3-oxoacyl-ACP synthase
2013_40cm_scaffold_4_24
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34791..35030)
DNA (240bp) protein (80aa)
acyl carrier protein id=3849704 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
acpP; acyl carrier protein; K02078 acyl carrier protein Tax=GWA2_Bacteroidetes_32_17_curated
acyl carrier protein
2013_40cm_scaffold_4_25
unknown

Not on your lists

35281..35463
DNA (183bp) protein (61aa)

This feature has no annotations

2013_40cm_scaffold_4_26
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

36047..36313
DNA (267bp) protein (89aa)
hypothetical protein id=4721379 bin=GWA2_Bacteroidetes_40_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_40_14 organism_group=Bacteroidetes organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KJS06922.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
2013_40cm_scaffold_4_27
unknown

Not on your lists

comp(36365..36994)
DNA (630bp) protein (210aa)

This feature has no annotations

2013_40cm_scaffold_4_28
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists


37255..38823
DNA (1569bp) protein (523aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:000025
Glycine--tRNA ligase id=4157540 bin=GWF2_Bacteroidetes_43_11 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
glycyl-tRNA synthetase
2013_40cm_scaffold_4_29
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38949..39389)
DNA (441bp) protein (147aa)
SAM-dependent methyltransferase (EC:2.1.1.-); K00599 [EC:2.1.1.-] id=14425565 bin=bin1_lowGC species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin1_lowGC organism_group=Unknown_CP
SAM-dependent methyltransferase {ECO:0000313|EMBL:KJJ38355.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacte
hypothetical protein
2013_40cm_scaffold_4_30
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(39776..39961)
DNA (186bp) protein (62aa)
Twin arginine-targeting protein translocase, TatA/E family n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VGL5_9SPHI
Twin arginine-targeting protein translocase, TatA/E family {ECO:0000313|EMBL:EEI91794.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphi
twin arginine-targeting protein translocase, TatA/E family
Displaying items 1-30 of 307 in total

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