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berkeley_reactor_200306_biofilm_scaffold_71385

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_71385_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1..459)
DNA (459bp) protein (153aa)
Metallophosphoesterase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W736_DYAFD
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ACT92645.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_biofilm_scaffold_71385_2
unknown

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605..1099
DNA (495bp) protein (165aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_71385_3
Algibacter lectus, Algibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1215..2972)
DNA (1758bp) protein (586aa)
hypothetical protein n=1 Tax=Flavobacteriaceae bacterium S85 RepID=UPI0002559D74
Uncharacterized protein {ECO:0000313|EMBL:GAL64863.1}; TaxID=221126 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter.;" source="Algibacter lectus.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_71385_4

Not on your lists

comp(2985..6581)
DNA (3597bp) protein (1199aa)
TonB-dependent receptor plug n=1 Tax=Flavobacteriaceae bacterium S85 RepID=UPI0002559D75
Uncharacterized protein {ECO:0000313|EMBL:KKN98260.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
TonB-dependent receptor plug
berkeley_reactor_200306_biofilm_scaffold_71385_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6769..7953)
DNA (1185bp) protein (395aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TM28_NIAKG
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEV99801.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_71385_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8050..8646)
DNA (597bp) protein (199aa)
RNA polymerase sigma factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7R3_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_71385_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8841..9470
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNV6_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02041.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_71385_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9651..10676
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000367028E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02042.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_71385_9
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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10745..11812
DNA (1068bp) protein (356aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|SAAS:SAAS00182444};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036FB96E
phosphoserine aminotransferase apoenzyme
berkeley_reactor_200306_biofilm_scaffold_71385_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11835..13061
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036500A7
hypothetical protein
Uncharacterized conserved protein UCP033563 {ECO:0000313|EMBL:AEW02044.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_71385_11
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13102..13395
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI0003710689
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB36597.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
berkeley_reactor_200306_biofilm_scaffold_71385_12
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13350..13979
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QFB9_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKD56835.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_biofilm_scaffold_71385_13
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14239..14970)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000368716E
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:AKD03670.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
berkeley_reactor_200306_biofilm_scaffold_71385_14
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15131..18211)
DNA (3081bp) protein (1027aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036D769D
dehydrogenase
Dehydrogenase {ECO:0000313|EMBL:AKD57696.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_biofilm_scaffold_71385_15
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18845..20494
DNA (1650bp) protein (550aa)
ABC transporter related n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL22_CHIPD
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACU63932.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_biofilm_scaffold_71385_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20641..21414
DNA (774bp) protein (258aa)
Lysozyme {ECO:0000313|EMBL:AEW02471.1}; EC=3.2.1.17 {ECO:0000313|EMBL:AEW02471.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Lysozyme n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB88_NIAKG
lysozyme
berkeley_reactor_200306_biofilm_scaffold_71385_17
unknown

Not on your lists

21431..21655
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_71385_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22152..23183)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP44_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03162.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_71385_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23310..24347
DNA (1038bp) protein (346aa)
radical SAM protein n=1 Tax=Segetibacter koreensis RepID=UPI000363E614
radical SAM protein
Radical SAM domain protein {ECO:0000313|EMBL:AEW02470.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_71385_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24526..25140
DNA (615bp) protein (205aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGA1_NIAKG
Sua5/YciO/YrdC/YwlC family protein
Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:AEW02740.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_biofilm_scaffold_71385_21
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25260..26441)
DNA (1182bp) protein (394aa)
Membrane dipeptidase n=1 Tax=Pontibacter sp. BAB1700 RepID=J1FHK0_9BACT
Putative dipeptidase {ECO:0000313|EMBL:GAO42198.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
dipeptidase
berkeley_reactor_200306_biofilm_scaffold_71385_22
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26582..27127)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF65_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC96453.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_71385_23
unknown

Not on your lists

27480..27653
DNA (174bp) protein (58aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_71385_24
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27788..29032
DNA (1245bp) protein (415aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XUH4_PEDHD
3-oxoacyl-ACP synthase
berkeley_reactor_200306_biofilm_scaffold_71385_trna_1
unknown

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29191..29263
DNA (73bp)
transferRNA Phe
berkeley_reactor_200306_biofilm_scaffold_71385_25
unknown

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comp(29535..29774)
DNA (240bp) protein (80aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_71385_26
unknown

Not on your lists

comp(29807..30574)
DNA (768bp) protein (256aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_71385_27
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30937..32049
DNA (1113bp) protein (371aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Gillisia limnaea DSM 15749 RepID=H2BXM4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KHE93870.1}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
filamentation induced by cAMP protein fic
berkeley_reactor_200306_biofilm_scaffold_71385_28
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32480..33724)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SRA3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU28707.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_71385_29
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33760..34275)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SQ18_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU28706.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
Displaying items 1-30 of 83 in total

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